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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106376785   transcription factor bHLH112-like 
 ath-u.5   AT3G20640   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT1G61660   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   106795829   uncharacterized LOC106795829 
 gma-u.5   100797286   transcription factor bHLH123 
 vvi-u.5   100267585   transcription factor bHLH123 
 vvi-u.5   100264251   transcription factor bHLH112 
 ppo-u.5   7497032   transcription factor bHLH112 
 ppo-u.5   7470906   transcription factor bHLH123 
 ppo-u.5   18095864   transcription factor bHLH123 
 mtr-u.5   25502666   transcription factor bHLH123 
 mtr-u.5   11428544   transcription factor bHLH112 
 mtr-u.5   11407905   transcription factor bHLH123 
 sly-u.5   101263532   transcription factor bHLH123 
 sly-u.5   101264865   transcription factor bHLH123-like 
 osa-u.5   4327040   transcription factor bHLH123 
 osa-u.5   4339235   transcription factor bHLH68 
 zma-u.5   100277655   uncharacterized LOC100277655 
 zma-u.5   100384230   uncharacterized LOC100384230 

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Top 50 coexpressed genes to 106376785 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106376785 (bna-r.1 coexpression data)

CoexMap"106376785"


bnaLOC106376785 | Entrez gene ID : 106376785    
Species bna ath gma vvi ppo mtr sly osa zma bdi hvu bra cit sbi ghi sot nta cre tae
Paralog 1 2 2 2 3 3 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1371 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (792 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (968 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1531 genes)  IEA  
Protein XP_013672354.2 [sequence] [blastp]
XP_013672355.2 [sequence] [blastp]
XP_013672356.2 [sequence] [blastp]
XP_013672358.2 [sequence] [blastp]
XP_048601801.1 [sequence] [blastp]
XP_048601802.1 [sequence] [blastp]
XP_048601803.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_013672354.2)
nucl 10  (predict for XP_013672355.2)
nucl 10  (predict for XP_013672356.2)
nucl 10  (predict for XP_013672358.2)
nucl 9,  extr 1,  cysk 1  (predict for XP_048601801.1)
nucl 9  (predict for XP_048601802.1)
nucl 10  (predict for XP_048601803.1)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for XP_013672354.2)
other 5,  chlo 4  (predict for XP_013672355.2)
other 5,  chlo 4  (predict for XP_013672356.2)
other 5,  chlo 4  (predict for XP_013672358.2)
other 5,  chlo 4  (predict for XP_048601801.1)
other 5,  chlo 4  (predict for XP_048601802.1)
other 5,  chlo 4  (predict for XP_048601803.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106376785
ath-u.5
for
AT3G20640
ath-u.5
for
AT1G61660
gma-u.5
for
106795829
gma-u.5
for
100797286
vvi-u.5
for
100267585
vvi-u.5
for
100264251
ppo-u.5
for
7497032
ppo-u.5
for
7470906
ppo-u.5
for
18095864
mtr-u.5
for
25502666
mtr-u.5
for
11428544
mtr-u.5
for
11407905
sly-u.5
for
101263532
sly-u.5
for
101264865
osa-u.5
for
4327040
osa-u.5
for
4339235
zma-u.5
for
100277655
zma-u.5
for
100384230


Ortholog ID: 1346
Species bna bna bra bra ath ath ghi ghi cit cit gma vvi vvi ppo ppo mtr mtr sly sot sot nta nta osa osa zma zma tae hvu hvu sbi sbi bdi bdi
Symbol LOC106346043 LOC106376785 LOC103830854 LOC103869298 AT3G20640 AT1G61660 LOC107903513 LOC107962157 LOC102615855 LOC102619495 LOC106795829 LOC100264251 LOC100267585 LOC18097442 LOC7470906 LOC11407905 LOC11428544 LOC101268539 LOC102581143 LOC102601454 LOC107763722 LOC107806502 LOC4339235 LOC4327040 LOC100277655 LOC100384230 LOC123167348 LOC123440342 LOC123413207 LOC8067473 LOC110433436 LOC100822020 LOC100841119
Function* transcription factor bHLH123 transcription factor bHLH112-like transcription factor bHLH112 transcription factor bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH112 transcription factor bHLH123 uncharacterized LOC106795829 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH112 transcription factor bHLH123-like transcription factor bHLH123-like transcription factor bHLH112-like transcription factor bHLH123-like transcription factor bHLH68 transcription factor bHLH123 uncharacterized LOC100277655 uncharacterized LOC100384230 transcription factor bHLH112 uncharacterized LOC123440342 transcription factor bHLH111-like transcription factor UNE12 transcription factor bHLH112-like transcription factor bHLH123 transcription factor bHLH123
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma04016 MAPK signaling pathway - plant 2
zma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 4
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106346043 106376785 103830854 103869298 821611 842462 107903513 107962157 102615855 102619495 106795829 100264251 100267585 18097442 7470906 11407905 11428544 101268539 102581143 102601454 107763722 107806502 4339235 4327040 100277655 100384230 123167348 123440342 123413207 8067473 110433436 100822020 100841119
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