ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106384976	succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial-like
bna-r.1	106380527	succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial-like
bna-r.1	125581381	succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial-like
bna-r.1	125579085	succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial-like
bra-r.6	103847149	succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
bra-r.6	103850689	succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
bra-r.6	103855774	succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
ath-u.5	AT5G08300	Succinyl-CoA ligase, alpha subunit
ath-u.5	AT5G23250	Succinyl-CoA ligase, alpha subunit
ghi-r.1	107886890	succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
ghi-r.1	107909029	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
ghi-r.1	107920651	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
cit-r.1	102628853	succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
cit-r.1	102611057	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
gma-u.5	100782001	succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial-like
gma-u.5	100815484	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
vvi-u.5	100261358	succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
vvi-u.5	100261494	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
ppo-u.5	7486370	succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
ppo-u.5	18103612	succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
ppo-u.5	7454042	succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
mtr-u.5	11414653	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
sly-u.5	SCOA	succinyl-CoA ligase alpha 1 subunit
sly-u.5	543943	succinyl-CoA ligase alpha 2 subunit
sot-r.1	102594891	succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
sot-r.1	102590419	succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
nta-r.1	107791622	succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
nta-r.1	107830273	succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
nta-r.1	107783576	succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
osa-u.5	4343710	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial-like
zma-u.5	100216609	succinyl-CoA ligase alpha-chain 2
zma-u.5	100283329	succinyl-CoA ligase alpha-chain 2
tae-r.2	123044441	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
tae-r.2	123188104	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
tae-r.2	123052304	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
hvu-r.1	123425576	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
sbi-r.1	8066942	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
bdi-r.1	100843332	succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial
cre-r.1	CHLRE_03g193850v5	uncharacterized protein

Top 50 coexpressed genes to 106384976 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106384976 (bna-r.1 coexpression data)

CoexMap"106384976"

[Cytoscape]

Annotation

functional annotation

KEGG

bna00020 [list] [network] Citrate cycle (TCA cycle) (195 genes)

bna00640 [list] [network] Propanoate metabolism (109 genes)

bna01200 [list] [network] Carbon metabolism (888 genes)

GO BP

GO:0006099 [list] [network] tricarboxylic acid cycle

(166 genes)

IEA

GO CC

GO:0009361 [list] [network] succinate-CoA ligase complex (ADP-forming)	(8 genes)	IEA
GO:0005739 [list] [network] mitochondrion	(1831 genes)	IEA

GO MF

GO:0004776 [list] [network] succinate-CoA ligase (GDP-forming) activity	(8 genes)	IEA
GO:0004775 [list] [network] succinate-CoA ligase (ADP-forming) activity	(18 genes)	IEA

Protein

XP_013680358.3 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, chlo_mito 5, chlo 3

(predict for XP_013680358.3)

Subcellular
localization
TargetP

mito 7, chlo 5

(predict for XP_013680358.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106384976	bna-r.1 for 106380527	bna-r.1 for 125581381	bna-r.1 for 125579085	bra-r.6 for 103847149	bra-r.6 for 103850689	bra-r.6 for 103855774	ath-u.5 for AT5G08300	ath-u.5 for AT5G23250	ghi-r.1 for 107886890	ghi-r.1 for 107909029	ghi-r.1 for 107920651	cit-r.1 for 102628853	cit-r.1 for 102611057	gma-u.5 for 100782001	gma-u.5 for 100815484	vvi-u.5 for 100261358	vvi-u.5 for 100261494	ppo-u.5 for 7486370	ppo-u.5 for 18103612	ppo-u.5 for 7454042	mtr-u.5 for 11414653	sly-u.5 for SCOA	sly-u.5 for 543943	sot-r.1 for 102594891	sot-r.1 for 102590419	nta-r.1 for 107791622	nta-r.1 for 107830273	nta-r.1 for 107783576	osa-u.5 for 4343710	zma-u.5 for 100216609	zma-u.5 for 100283329	tae-r.2 for 123044441	tae-r.2 for 123188104	tae-r.2 for 123052304	hvu-r.1 for 123425576	sbi-r.1 for 8066942	bdi-r.1 for 100843332	cre-r.1 for CHLRE_03g193850v5

Ortholog

Ortholog ID: 4120

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SCOA

Function^*

succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial-like

succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial

succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial

Succinyl-CoA ligase, alpha subunit

succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial

succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial

succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial

succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial

succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial-like

succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial

succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial

succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial

succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial

succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial

succinyl-CoA ligase alpha 1 subunit

succinyl-CoA ligase alpha 2 subunit

succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial

succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial

succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial

succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial-like

succinyl-CoA ligase alpha-chain 2

succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00020	Citrate cycle (TCA cycle)	8
bna00640	Propanoate metabolism	8
bna01200	Carbon metabolism	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00020	Citrate cycle (TCA cycle)	8
bna00640	Propanoate metabolism	8
bna01200	Carbon metabolism	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00020	Citrate cycle (TCA cycle)	8
bna00640	Propanoate metabolism	8
bna01200	Carbon metabolism	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	8
bra00020	Citrate cycle (TCA cycle)	5
bra01200	Carbon metabolism	5
bra01210	2-Oxocarboxylic acid metabolism	3
bra01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00020	Citrate cycle (TCA cycle)	4
bra01200	Carbon metabolism	4
bra00330	Arginine and proline metabolism	3
bra00190	Oxidative phosphorylation	3
bra00640	Propanoate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	10
bra03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	12
ath00020	Citrate cycle (TCA cycle)	11
ath01210	2-Oxocarboxylic acid metabolism	8
ath01230	Biosynthesis of amino acids	5
ath00785	Lipoic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	4
ath00640	Propanoate metabolism	2
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	8
ghi00020	Citrate cycle (TCA cycle)	6
ghi00640	Propanoate metabolism	6
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	7
ghi00020	Citrate cycle (TCA cycle)	6
ghi00640	Propanoate metabolism	5
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00020	Citrate cycle (TCA cycle)	6
ghi01200	Carbon metabolism	6
ghi00640	Propanoate metabolism	4
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	6
cit00020	Citrate cycle (TCA cycle)	5
cit01230	Biosynthesis of amino acids	4
cit00620	Pyruvate metabolism	3
cit00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	4
cit00020	Citrate cycle (TCA cycle)	3
cit00190	Oxidative phosphorylation	3
cit04141	Protein processing in endoplasmic reticulum	3
cit01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	11
gma00020	Citrate cycle (TCA cycle)	5
gma01200	Carbon metabolism	5
gma00640	Propanoate metabolism	4
gma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	7
gma03010	Ribosome	6
gma00020	Citrate cycle (TCA cycle)	6
gma00620	Pyruvate metabolism	3
gma00640	Propanoate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	4
vvi00010	Glycolysis / Gluconeogenesis	3
vvi00020	Citrate cycle (TCA cycle)	3
vvi01200	Carbon metabolism	3
vvi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	10
vvi00020	Citrate cycle (TCA cycle)	9
vvi01210	2-Oxocarboxylic acid metabolism	7
vvi01230	Biosynthesis of amino acids	4
vvi00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	12
ppo04141	Protein processing in endoplasmic reticulum	7
ppo00510	N-Glycan biosynthesis	2
ppo00513	Various types of N-glycan biosynthesis	2
ppo03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	6
ppo00541	Biosynthesis of various nucleotide sugars	3
ppo01250	Biosynthesis of nucleotide sugars	3
ppo00020	Citrate cycle (TCA cycle)	2
ppo00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	6
ppo00010	Glycolysis / Gluconeogenesis	5
ppo00020	Citrate cycle (TCA cycle)	4
ppo01230	Biosynthesis of amino acids	3
ppo00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00020	Citrate cycle (TCA cycle)	7
mtr01200	Carbon metabolism	7
mtr00190	Oxidative phosphorylation	6
mtr01210	2-Oxocarboxylic acid metabolism	5
mtr00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	8
sly00020	Citrate cycle (TCA cycle)	7
sly01210	2-Oxocarboxylic acid metabolism	6
sly00640	Propanoate metabolism	3
sly00785	Lipoic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	5
sly00020	Citrate cycle (TCA cycle)	3
sly01200	Carbon metabolism	3
sly04120	Ubiquitin mediated proteolysis	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	5
sot00020	Citrate cycle (TCA cycle)	4
sot01200	Carbon metabolism	4
sot00640	Propanoate metabolism	3
sot00220	Arginine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	9
sot00020	Citrate cycle (TCA cycle)	7
sot00190	Oxidative phosphorylation	4
sot01210	2-Oxocarboxylic acid metabolism	4
sot00640	Propanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	7
nta00640	Propanoate metabolism	5
nta01200	Carbon metabolism	5
nta03050	Proteasome	4
nta00020	Citrate cycle (TCA cycle)	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	8
nta00640	Propanoate metabolism	5
nta01200	Carbon metabolism	5
nta00020	Citrate cycle (TCA cycle)	3
nta00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	7
nta00020	Citrate cycle (TCA cycle)	5
nta00640	Propanoate metabolism	5
nta00190	Oxidative phosphorylation	5
nta00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	11
osa00020	Citrate cycle (TCA cycle)	9
osa01210	2-Oxocarboxylic acid metabolism	7
osa00785	Lipoic acid metabolism	6
osa00010	Glycolysis / Gluconeogenesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	9
zma00020	Citrate cycle (TCA cycle)	7
zma01200	Carbon metabolism	7
zma00640	Propanoate metabolism	5
zma00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00020	Citrate cycle (TCA cycle)	10
zma01200	Carbon metabolism	10
zma01210	2-Oxocarboxylic acid metabolism	7
zma00640	Propanoate metabolism	6
zma00785	Lipoic acid metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	10
tae00020	Citrate cycle (TCA cycle)	6
tae00640	Propanoate metabolism	6
tae00190	Oxidative phosphorylation	6
tae01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	10
tae00020	Citrate cycle (TCA cycle)	6
tae00640	Propanoate metabolism	6
tae01230	Biosynthesis of amino acids	4
tae00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	10
tae00190	Oxidative phosphorylation	6
tae00020	Citrate cycle (TCA cycle)	6
tae00640	Propanoate metabolism	6
tae01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	9
hvu00020	Citrate cycle (TCA cycle)	7
hvu01210	2-Oxocarboxylic acid metabolism	5
hvu00010	Glycolysis / Gluconeogenesis	5
hvu00620	Pyruvate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	5
sbi03050	Proteasome	4
sbi00020	Citrate cycle (TCA cycle)	2
sbi00640	Propanoate metabolism	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00020	Citrate cycle (TCA cycle)	7
bdi00190	Oxidative phosphorylation	7
bdi01200	Carbon metabolism	7
bdi00620	Pyruvate metabolism	4
bdi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01200	Carbon metabolism	10
cre00020	Citrate cycle (TCA cycle)	8
cre00190	Oxidative phosphorylation	3
cre01230	Biosynthesis of amino acids	2
cre00640	Propanoate metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

106384976

125581381

125579085

103850689

103855774

103860515

830726

832389

107886890

107920651

107894049

102628853

102611057

100782001

100815484

100261358

100261494

7486370

18103612

7454042

11414653

543860

543943

102594891

102590419

107791622

107830273

107783576

4343710

100216609

100283329

123044441

123188104

123052304

123425576

8066942

100843332

5718710

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	2	3	2	2	2	3	1	2	2	3	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106384976 (bna-r.1 coexpression data)

Top 50 enrichment test to 106384976 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**