ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106387578	sister chromatid cohesion protein PDS5 homolog E-like
bna-r.1	106384875	sister chromatid cohesion protein PDS5 homolog C-like
bra-r.6	103855892	DEAD-box ATP-dependent RNA helicase 28
bra-r.6	103832454	glutamic acid-rich protein
bra-r.6	103842872	cinnamoyl-CoA reductase 1
ath-u.5	AT4G31880	transcriptional regulator
ath-u.5	AT5G10950	Tudor/PWWP/MBT superfamily protein
ath-u.5	AT1G15940	Tudor/PWWP/MBT superfamily protein
ghi-r.1	107961680	uncharacterized LOC107961680
ghi-r.1	107901619	nucleolar and coiled-body phosphoprotein 1
ghi-r.1	107906837	triadin
cit-r.1	102624143	sister chromatid cohesion protein PDS5 homolog C
cit-r.1	102614026	sister chromatid cohesion protein PDS5 homolog C-like
gma-u.5	100812058	uncharacterized LOC100812058
ppo-u.5	7485299	sister chromatid cohesion protein PDS5 homolog C
ppo-u.5	7465412	sister chromatid cohesion protein PDS5 homolog C
ppo-u.5	7493222	sister chromatid cohesion protein PDS5 homolog D
mtr-u.5	25491183	uncharacterized LOC25491183
mtr-u.5	11437017	sister chromatid cohesion protein PDS5
mtr-u.5	11423336	muscle M-line assembly protein unc-89
sly-u.5	101246231	sister chromatid cohesion protein PDS5 homolog E
sly-u.5	101253678	sister chromatid cohesion protein PDS5 homolog D-like
sot-r.1	102586851	uncharacterized LOC102586851
sot-r.1	102591968	uncharacterized LOC102591968
sot-r.1	102606228	uncharacterized LOC102606228
nta-r.1	107772436	sister chromatid cohesion protein PDS5 homolog C-like
nta-r.1	107777129	sister chromatid cohesion protein PDS5 homolog C-like
nta-r.1	107787947	sister chromatid cohesion protein PDS5 homolog C
osa-u.5	9266945	sister chromatid cohesion protein PDS5 homolog C
osa-u.5	4336311	sister chromatid cohesion protein PDS5 homolog C
osa-u.5	4335488	sister chromatid cohesion protein PDS5 homolog D
zma-u.5	103654690	sister chromatid cohesion protein PDS5 homolog B-B-like
zma-u.5	109939418	uncharacterized LOC109939418
zma-u.5	103646255	titin homolog
tae-r.2	123127794	uncharacterized LOC123127794
tae-r.2	123137451	neurofilament heavy polypeptide
hvu-r.1	123401818	neurofilament heavy polypeptide-like
hvu-r.1	123427162	ABC transporter F family member 4-like
sbi-r.1	8071467	MATH and LRR domain-containing protein PFE0570w
sbi-r.1	8059675	microtubule-associated protein futsch
sbi-r.1	8060213	enolase-phosphatase E1
bdi-r.1	100825062	uncharacterized LOC100825062
bdi-r.1	100823597	muscle M-line assembly protein unc-89
cre-r.1	CHLRE_02g099601v5	uncharacterized protein
cre-r.1	CHLRE_01g032550v5	uncharacterized protein

Top 50 coexpressed genes to 106387578 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106387578 (bna-r.1 coexpression data)

CoexMap"106387578"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0007064 [list] [network] mitotic sister chromatid cohesion	(74 genes)	IEA
GO:0006281 [list] [network] DNA repair	(1192 genes)	IEA

GO CC

GO:0000785 [list] [network] chromatin	(564 genes)	IEA
GO:0005634 [list] [network] nucleus	(9971 genes)	IEA

GO MF

Protein

XP_048594117.1 [sequence] [blastp]
XP_048594118.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_048594117.1)
nucl 10	(predict for XP_048594118.1)

Subcellular
localization
TargetP

other 8	(predict for XP_048594117.1)
other 8	(predict for XP_048594118.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106387578	bna-r.1 for 106384875	bra-r.6 for 103855892	bra-r.6 for 103832454	bra-r.6 for 103842872	ath-u.5 for AT4G31880	ath-u.5 for AT5G10950	ath-u.5 for AT1G15940	ghi-r.1 for 107961680	ghi-r.1 for 107901619	ghi-r.1 for 107906837	cit-r.1 for 102624143	cit-r.1 for 102614026	gma-u.5 for 100812058	ppo-u.5 for 7485299	ppo-u.5 for 7465412	ppo-u.5 for 7493222	mtr-u.5 for 25491183	mtr-u.5 for 11437017	mtr-u.5 for 11423336	sly-u.5 for 101246231	sly-u.5 for 101253678	sot-r.1 for 102586851	sot-r.1 for 102591968	sot-r.1 for 102606228	nta-r.1 for 107772436	nta-r.1 for 107777129	nta-r.1 for 107787947	osa-u.5 for 9266945	osa-u.5 for 4336311	osa-u.5 for 4335488	zma-u.5 for 103654690	zma-u.5 for 109939418	zma-u.5 for 103646255	tae-r.2 for 123127794	tae-r.2 for 123137451	hvu-r.1 for 123401818	hvu-r.1 for 123427162	sbi-r.1 for 8071467	sbi-r.1 for 8059675	sbi-r.1 for 8060213	bdi-r.1 for 100825062	bdi-r.1 for 100823597	cre-r.1 for CHLRE_02g099601v5	cre-r.1 for CHLRE_01g032550v5

Ortholog

Ortholog ID: 597

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

sister chromatid cohesion protein PDS5 homolog D-like

sister chromatid cohesion protein PDS5 homolog C-like

sister chromatid cohesion protein PDS5 homolog E-like

DEAD-box ATP-dependent RNA helicase 28

cinnamoyl-CoA reductase 1

neurofilament heavy polypeptide

transcriptional regulator

Tudor/PWWP/MBT superfamily protein

triadin

WASH complex subunit 2

sister chromatid cohesion protein PDS5 homolog C

sister chromatid cohesion protein PDS5 homolog C-like

uncharacterized LOC100812058

muscle M-line assembly protein unc-89

sister chromatid cohesion protein PDS5 homolog C

sister chromatid cohesion protein PDS5 homolog D

uncharacterized LOC7493403

sister chromatid cohesion protein PDS5 homolog D

sister chromatid cohesion protein PDS5

muscle M-line assembly protein unc-89

triadin

sister chromatid cohesion protein PDS5 homolog E

sister chromatid cohesion protein PDS5 homolog D-like

muscle M-line assembly protein unc-89

uncharacterized LOC102591624

uncharacterized LOC102591295

sister chromatid cohesion protein PDS5 homolog C-like

sister chromatid cohesion protein PDS5 homolog D

sister chromatid cohesion protein PDS5 homolog C

sister chromatid cohesion protein PDS5 homolog D

sister chromatid cohesion protein PDS5 homolog B-B-like

titin homolog

uncharacterized LOC103653756

neurofilament heavy polypeptide

nucleolar protein dao-5

neurofilament heavy polypeptide-like

ABC transporter F family member 4-like

MATH and LRR domain-containing protein PFE0570w

microtubule-associated protein futsch

enolase-phosphatase E1

uncharacterized LOC100825062

muscle M-line assembly protein unc-89

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03013	Nucleocytoplasmic transport	2
ghi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00310	Lysine degradation	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03410	Base excision repair	3
ppo00010	Glycolysis / Gluconeogenesis	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03410	Base excision repair	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3
bdi03013	Nucleocytoplasmic transport	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

106430760

106420502

106346800

103855892

103842872

103862094

829318

838164

844420

107906837

107906838

107953744

102624143

102614026

100812058

100790092

100260975

100248351

7493222

7493403

7487059

11437017

11423336

11442229

101246231

101253678

102605879

102591624

102591295

107772436

107830807

107767311

9266945

4336311

4335488

103654690

103646255

103653756

123137451

123144807

123045941

123401818

123427162

8071467

8059675

8060213

100825062

100823597

66052408

5715404

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Species	bna	bra	ath	ghi	cit	gma	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	vvi
Paralog	2	3	3	3	2	1	3	3	2	3	3	3	3	2	2	3	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106387578 (bna-r.1 coexpression data)

Top 50 enrichment test to 106387578 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**