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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106389835   protein Iojap, chloroplastic-like 
 bna-r.1   111211933   protein Iojap, chloroplastic 
 bna-r.1   111210896   protein Iojap, chloroplastic 
 bra-r.6   103870207   protein Iojap, chloroplastic 
 bra-r.6   103849723   protein Iojap, chloroplastic 
 ath-u.5   AT3G12930   Lojap-related protein 
 ghi-r.1   107948480   protein Iojap, chloroplastic 
 ghi-r.1   121216752   protein Iojap, chloroplastic 
 cit-r.1   102614836   protein Iojap, chloroplastic 
 gma-u.5   100806910   protein Iojap, chloroplastic 
 gma-u.5   100306104   protein Iojap-like 
 vvi-u.5   100245577   Lojap-related-like 
 ppo-u.5   7488105   protein Iojap, chloroplastic 
 ppo-u.5   7480376   protein Iojap, chloroplastic 
 mtr-u.5   11406804   protein Iojap, chloroplastic 
 sly-u.5   101258281   protein Iojap, chloroplastic 
 sot-r.1   102581057   protein Iojap, chloroplastic 
 nta-r.1   107802602   protein Iojap, chloroplastic 
 nta-r.1   107767994   protein Iojap, chloroplastic 
 osa-u.5   4347448   protein Iojap, chloroplastic 
 zma-u.5   542470   iojap striping 1 
 tae-r.2   123121974   protein Iojap, chloroplastic 
 tae-r.2   123104215   protein Iojap, chloroplastic 
 tae-r.2   123112462   protein Iojap, chloroplastic 
 hvu-r.1   123399508   protein Iojap, chloroplastic 
 sbi-r.1   8054746   protein Iojap, chloroplastic 
 bdi-r.1   100830259   protein Iojap, chloroplastic 
 cre-r.1   CHLRE_03g205600v5   uncharacterized protein 

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Top 50 coexpressed genes to 106389835 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106389835 (bna-r.1 coexpression data)

CoexMap"106389835"


bnaLOC106389835 | Entrez gene ID : 106389835    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 1 2 1 2 1 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0090071 [list] [network] negative regulation of ribosome biogenesis  (5 genes)  IEA  
GO:0017148 [list] [network] negative regulation of translation  (54 genes)  IEA  
GO CC
GO MF
GO:0043023 [list] [network] ribosomal large subunit binding  (27 genes)  IEA  
Protein XP_013685631.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_013685631.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_013685631.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106389835
bna-r.1
for
111211933
bna-r.1
for
111210896
bra-r.6
for
103870207
bra-r.6
for
103849723
ath-u.5
for
AT3G12930
ghi-r.1
for
107948480
ghi-r.1
for
121216752
cit-r.1
for
102614836
gma-u.5
for
100806910
gma-u.5
for
100306104
vvi-u.5
for
100245577
ppo-u.5
for
7488105
ppo-u.5
for
7480376
mtr-u.5
for
11406804
sly-u.5
for
101258281
sot-r.1
for
102581057
nta-r.1
for
107802602
nta-r.1
for
107767994
osa-u.5
for
4347448
zma-u.5
for
542470
tae-r.2
for
123121974
tae-r.2
for
123104215
tae-r.2
for
123112462
hvu-r.1
for
123399508
sbi-r.1
for
8054746
bdi-r.1
for
100830259
cre-r.1
for
CHLRE_03g205600v5


Ortholog ID: 8455
Species bna bna bna bra bra ath ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106389835 LOC111211933 LOC111210896 LOC103870207 LOC103849723 AT3G12930 LOC107948480 LOC121216752 LOC102614836 LOC100806910 LOC100306104 LOC100245577 LOC7488105 LOC7480376 LOC11406804 LOC101258281 LOC102581057 LOC107802602 LOC107767994 LOC4347448 LOC542470 LOC123121974 LOC123104215 LOC123112462 LOC123399508 LOC8054746 LOC100830259 CHLRE_03g205600v5
Function* protein Iojap, chloroplastic-like protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic Lojap-related protein protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap-like Lojap-related-like protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic iojap striping 1 protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic protein Iojap, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00670 One carbon pool by folate 2
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo01250 Biosynthesis of nucleotide sugars 2
ppo00500 Starch and sucrose metabolism 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00630 Glyoxylate and dicarboxylate metabolism 3
hvu01200 Carbon metabolism 3
hvu00280 Valine, leucine and isoleucine degradation 2
hvu00650 Butanoate metabolism 2
hvu00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi00520 Amino sugar and nucleotide sugar metabolism 2
bdi00561 Glycerolipid metabolism 2
bdi00566 Sulfoquinovose metabolism 2
bdi01250 Biosynthesis of nucleotide sugars 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106389835 111211933 111210896 103870207 103849723 820478 107948480 121216752 102614836 100806910 100306104 100245577 7488105 7480376 11406804 101258281 102581057 107802602 107767994 4347448 542470 123121974 123104215 123112462 123399508 8054746 100830259 66053048
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