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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106394353   mediator of RNA polymerase II transcription subunit 33B-like 
 bna-r.1   125585470   mediator of RNA polymerase II transcription subunit 33B 
 bna-r.1   111215503   mediator of RNA polymerase II transcription subunit 33B-like 
 bna-r.1   106452905   mediator of RNA polymerase II transcription subunit 33A 
 bra-r.6   103828726   mediator of RNA polymerase II transcription subunit 33A 
 bra-r.6   103866329   mediator of RNA polymerase II transcription subunit 33B 
 ath-u.5   REF4   reduced epidermal fluorescence 4 
 ath-u.5   RFR1   REF4-related 1 
 ghi-r.1   107943811   mediator of RNA polymerase II transcription subunit 33B 
 ghi-r.1   107912412   mediator of RNA polymerase II transcription subunit 33B 
 ghi-r.1   107923868   mediator of RNA polymerase II transcription subunit 33B 
 cit-r.1   102627163   mediator of RNA polymerase II transcription subunit 33B 
 cit-r.1   102625109   mediator of RNA polymerase II transcription subunit 33A 
 gma-u.5   100812937   mediator of RNA polymerase II transcription subunit 33A 
 gma-u.5   100785972   mediator of RNA polymerase II transcription subunit 33B 
 vvi-u.5   100254459   mediator of RNA polymerase II transcription subunit 33A 
 vvi-u.5   100247741   mediator of RNA polymerase II transcription subunit 33A 
 ppo-u.5   7454243   mediator of RNA polymerase II transcription subunit 33A 
 ppo-u.5   7457991   mediator of RNA polymerase II transcription subunit 33B 
 ppo-u.5   7458250   mediator of RNA polymerase II transcription subunit 33B-like 
 mtr-u.5   25499095   mediator of RNA polymerase II transcription subunit 33A 
 mtr-u.5   25488025   mediator of RNA polymerase II transcription subunit 33B 
 mtr-u.5   11440359   mediator of RNA polymerase II transcription subunit 33A 
 sly-u.5   101268578   mediator of RNA polymerase II transcription subunit 33A-like 
 sly-u.5   101260265   mediator of RNA polymerase II transcription subunit 33A 
 sly-u.5   101249759   mediator of RNA polymerase II transcription subunit 33A-like 
 sot-r.1   102601086   mediator of RNA polymerase II transcription subunit 33A 
 sot-r.1   102582219   mediator of RNA polymerase II transcription subunit 33A 
 sot-r.1   102599520   mediator of RNA polymerase II transcription subunit 33A-like 
 nta-r.1   107828649   mediator of RNA polymerase II transcription subunit 33A 
 nta-r.1   107760000   mediator of RNA polymerase II transcription subunit 33A 
 nta-r.1   107775727   mediator of RNA polymerase II transcription subunit 33A 
 osa-u.5   4342710   mediator of RNA polymerase II transcription subunit 33A 
 zma-u.5   100275134   uncharacterized LOC100275134 
 tae-r.2   123188614   mediator of RNA polymerase II transcription subunit 33A 
 tae-r.2   123052769   mediator of RNA polymerase II transcription subunit 33A 
 tae-r.2   123044850   mediator of RNA polymerase II transcription subunit 33A 
 hvu-r.1   123426145   mediator of RNA polymerase II transcription subunit 33A 
 sbi-r.1   8069095   mediator of RNA polymerase II transcription subunit 33A 
 bdi-r.1   100828721   mediator of RNA polymerase II transcription subunit 33A 

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Top 50 coexpressed genes to 106394353 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106394353 (bna-r.1 coexpression data)

CoexMap"106394353"


bnaLOC106394353 | Entrez gene ID : 106394353    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 2 2 2 3 3 3 3 3 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:2000762 [list] [network] regulation of phenylpropanoid metabolic process  (18 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (98 genes)  IEA  
GO MF
Protein XP_013690378.2 [sequence] [blastp]
XP_048610532.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  vacu 3,  E.R. 2  (predict for XP_013690378.2)
plas 6,  vacu 1,  golg 1  (predict for XP_048610532.1)
Subcellular
localization
TargetP
other 7,  scret 3  (predict for XP_013690378.2)
chlo 2  (predict for XP_048610532.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106394353
bna-r.1
for
125585470
bna-r.1
for
111215503
bna-r.1
for
106452905
bra-r.6
for
103828726
bra-r.6
for
103866329
ath-u.5
for
REF4
ath-u.5
for
RFR1
ghi-r.1
for
107943811
ghi-r.1
for
107912412
ghi-r.1
for
107923868
cit-r.1
for
102627163
cit-r.1
for
102625109
gma-u.5
for
100812937
gma-u.5
for
100785972
vvi-u.5
for
100254459
vvi-u.5
for
100247741
ppo-u.5
for
7454243
ppo-u.5
for
7457991
ppo-u.5
for
7458250
mtr-u.5
for
25499095
mtr-u.5
for
25488025
mtr-u.5
for
11440359
sly-u.5
for
101268578
sly-u.5
for
101260265
sly-u.5
for
101249759
sot-r.1
for
102601086
sot-r.1
for
102582219
sot-r.1
for
102599520
nta-r.1
for
107828649
nta-r.1
for
107760000
nta-r.1
for
107775727
osa-u.5
for
4342710
zma-u.5
for
100275134
tae-r.2
for
123188614
tae-r.2
for
123052769
tae-r.2
for
123044850
hvu-r.1
for
123426145
sbi-r.1
for
8069095
bdi-r.1
for
100828721


Ortholog ID: 3003
Species bna bna bna bra bra ath ath ghi ghi ghi cit cit gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC125585470 LOC106357870 LOC106434839 LOC103828726 LOC103866329 REF4 RFR1 LOC107930378 LOC107936860 LOC107943551 LOC102627163 LOC102625109 LOC100785972 LOC100782680 LOC100254459 LOC100247741 LOC7454243 LOC7457991 LOC7458250 LOC25499095 LOC25488025 LOC11440359 LOC101268578 LOC101260265 LOC101249759 LOC102601086 LOC102582219 LOC102599520 LOC107760000 LOC107798182 LOC142179350 LOC4342710 LOC100275134 LOC123188614 LOC123052769 LOC123044850 LOC123426145 LOC8069095 LOC100828721
Function* mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33B reduced epidermal fluorescence 4 REF4-related 1 mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33B-like mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A-like mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A-like mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A-like mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A-like mediator of RNA polymerase II transcription subunit 33A-like mediator of RNA polymerase II transcription subunit 33A uncharacterized LOC100275134 mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 2
bra00051 Fructose and mannose metabolism 2
bra00052 Galactose metabolism 2
bra00500 Starch and sucrose metabolism 2
bra00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi00565 Ether lipid metabolism 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi00565 Ether lipid metabolism 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 12
ghi00380 Tryptophan metabolism 4
ghi00360 Phenylalanine metabolism 2
ghi00051 Fructose and mannose metabolism 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 6
cit00941 Flavonoid biosynthesis 2
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 13
gma00941 Flavonoid biosynthesis 6
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
gma00270 Cysteine and methionine metabolism 2
gma00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00940 Phenylpropanoid biosynthesis 7
ppo00670 One carbon pool by folate 7
ppo01230 Biosynthesis of amino acids 6
ppo01240 Biosynthesis of cofactors 6
ppo00941 Flavonoid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00564 Glycerophospholipid metabolism 3
sly00561 Glycerolipid metabolism 2
sly04070 Phosphatidylinositol signaling system 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00030 Pentose phosphate pathway 2
nta00480 Glutathione metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 2
tae04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125585470 106357870 106434839 103828726 103866329 819423 821938 107930378 107936860 107943551 102627163 102625109 100785972 100782680 100254459 100247741 7454243 7457991 7458250 25499095 25488025 11440359 101268578 101260265 101249759 102601086 102582219 102599520 107760000 107798182 142179350 4342710 100275134 123188614 123052769 123044850 123426145 8069095 100828721
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