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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106396023   probable E3 ubiquitin-protein ligase RHC1A 
 bna-r.1   106450687   probable E3 ubiquitin-protein ligase RHC1A 
 bna-r.1   106438014   probable E3 ubiquitin-protein ligase RHC1A 
 bra-r.6   103857956   probable E3 ubiquitin-protein ligase RHC1A 
 bra-r.6   103841559   E3 ubiquitin-protein ligase RZF1 
 bra-r.6   103866521   probable E3 ubiquitin-protein ligase RHC1A 
 ath-u.5   RHC1A   RING-H2 finger C1A 
 ath-u.5   AT3G56580   RING/U-box superfamily protein 
 ghi-r.1   107891393   probable E3 ubiquitin-protein ligase RHC1A 
 ghi-r.1   107889346   probable E3 ubiquitin-protein ligase RHC1A 
 cit-r.1   102615241   probable E3 ubiquitin-protein ligase RHC1A 
 gma-u.5   100819514   E3 ubiquitin-protein ligase RZF1 
 gma-u.5   100813674   probable E3 ubiquitin-protein ligase RHC1A 
 gma-u.5   100787523   probable E3 ubiquitin-protein ligase RHC1A 
 vvi-u.5   100251284   probable E3 ubiquitin-protein ligase RHC1A 
 vvi-u.5   100265395   probable E3 ubiquitin-protein ligase RHC1A 
 ppo-u.5   7458900   probable E3 ubiquitin-protein ligase RHC1A 
 ppo-u.5   7495674   probable E3 ubiquitin-protein ligase RHC1A 
 mtr-u.5   11431832   probable E3 ubiquitin-protein ligase RHC1A 
 mtr-u.5   25480121   probable E3 ubiquitin-protein ligase RHC1A 
 mtr-u.5   25483287   probable E3 ubiquitin-protein ligase RHC1A 
 sly-u.5   101254413   probable E3 ubiquitin-protein ligase RHC1A 
 sot-r.1   102601784   E3 ubiquitin-protein ligase RING1-like 
 nta-r.1   107775327   putative E3 ubiquitin-protein ligase RHC1A 
 nta-r.1   107764362   putative E3 ubiquitin-protein ligase RHC1A 
 osa-u.5   4332849   probable E3 ubiquitin-protein ligase RHC1A 
 zma-u.5   100283413   putative E3 ubiquitin-protein ligase RHC1A 
 tae-r.2   123080373   probable E3 ubiquitin-protein ligase RHC1A 
 tae-r.2   123072085   probable E3 ubiquitin-protein ligase RHC1A 
 tae-r.2   123063184   probable E3 ubiquitin-protein ligase RHC1A 
 hvu-r.1   123440732   probable E3 ubiquitin-protein ligase RHC1A 
 sbi-r.1   8082290   probable E3 ubiquitin-protein ligase RHC1A 
 bdi-r.1   100834834   probable E3 ubiquitin-protein ligase RHC1A 

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Top 50 coexpressed genes to 106396023 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106396023 (bna-r.1 coexpression data)

CoexMap"106396023"


bnaLOC106396023 | Entrez gene ID : 106396023    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 3 2 2 1 3 2 2 3 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (1065 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (605 genes)  IEA  
Protein XP_013691774.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto_nucl 4,  mito 1,  plas 1,  mito_plas 1  (predict for XP_013691774.1)
Subcellular
localization
TargetP
mito 7,  other 4  (predict for XP_013691774.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106396023
bna-r.1
for
106450687
bna-r.1
for
106438014
bra-r.6
for
103857956
bra-r.6
for
103841559
bra-r.6
for
103866521
ath-u.5
for
RHC1A
ath-u.5
for
AT3G56580
ghi-r.1
for
107891393
ghi-r.1
for
107889346
cit-r.1
for
102615241
gma-u.5
for
100819514
gma-u.5
for
100813674
gma-u.5
for
100787523
vvi-u.5
for
100251284
vvi-u.5
for
100265395
ppo-u.5
for
7458900
ppo-u.5
for
7495674
mtr-u.5
for
11431832
mtr-u.5
for
25480121
mtr-u.5
for
25483287
sly-u.5
for
101254413
sot-r.1
for
102601784
nta-r.1
for
107775327
nta-r.1
for
107764362
osa-u.5
for
4332849
zma-u.5
for
100283413
tae-r.2
for
123080373
tae-r.2
for
123072085
tae-r.2
for
123063184
hvu-r.1
for
123440732
sbi-r.1
for
8082290
bdi-r.1
for
100834834


Ortholog ID: 5276
Species bna bna bna bra bra bra ath ath ghi ghi cit gma gma gma vvi vvi ppo ppo mtr mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC106396023 LOC106438014 LOC106368078 LOC103857956 LOC103841559 LOC103866521 RHC1A AT3G56580 LOC107891393 LOC107889346 LOC102615241 LOC100819514 LOC100787523 LOC100787242 LOC100251284 LOC100265395 LOC7458900 LOC7495674 LOC11431832 LOC25480121 LOC25483287 LOC101254413 LOC102601784 LOC107775327 LOC107764362 LOC4332849 LOC100283413 LOC123080373 LOC123072085 LOC123063184 LOC123440732 LOC8082290 LOC100834834
Function* probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A E3 ubiquitin-protein ligase RZF1 probable E3 ubiquitin-protein ligase RHC1A E3 ubiquitin-protein ligase RZF1 probable E3 ubiquitin-protein ligase RHC1A RING-H2 finger C1A RING/U-box superfamily protein probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A E3 ubiquitin-protein ligase RZF1 probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A E3 ubiquitin-protein ligase RING1-like putative E3 ubiquitin-protein ligase RHC1A putative E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A putative E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A probable E3 ubiquitin-protein ligase RHC1A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00360 Phenylalanine metabolism 3
bna00650 Butanoate metabolism 3
bna01200 Carbon metabolism 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna00360 Phenylalanine metabolism 3
bna00650 Butanoate metabolism 3
bna01200 Carbon metabolism 3
bna00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04145 Phagosome 2
bna04517 IgSF CAM signaling 2
bna04814 Motor proteins 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 3
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00541 Biosynthesis of various nucleotide sugars 2
gma01250 Biosynthesis of nucleotide sugars 2
gma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00541 Biosynthesis of various nucleotide sugars 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00052 Galactose metabolism 2
mtr00500 Starch and sucrose metabolism 2
mtr04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00061 Fatty acid biosynthesis 2
tae01040 Biosynthesis of unsaturated fatty acids 2
tae01212 Fatty acid metabolism 2
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
bdi01240 Biosynthesis of cofactors 2
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106396023 106438014 106368078 103857956 103841559 103866521 818680 824825 107891393 107889346 102615241 100819514 100787523 100787242 100251284 100265395 7458900 7495674 11431832 25480121 25483287 101254413 102601784 107775327 107764362 4332849 100283413 123080373 123072085 123063184 123440732 8082290 100834834
The preparation time of this page was 3.6 [sec].