ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106399754	COBRA-like protein 2
bna-r.1	125587582	COBRA-like protein 1
bna-r.1	106453132	COBRA-like protein 6
bna-r.1	106432032	COBRA-like protein 4
bra-r.6	103875066	COBRA-like protein 2
bra-r.6	103836309	COBRA-like protein 6
bra-r.6	103849801	COBRA-like protein 2
ath-u.5	COB	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
ath-u.5	COBL6	COBRA-like protein 6 precursor
ath-u.5	IRX6	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
ghi-r.1	107946555	protein COBRA
cit-r.1	102609762	protein COBRA-like
cit-r.1	102610075	COBRA-like protein 4
gma-u.5	100815779	protein COBRA
gma-u.5	100811581	protein COBRA
gma-u.5	100815926	protein COBRA
vvi-u.5	100258803	COBRA-like protein 4
vvi-u.5	100263971	protein COBRA
mtr-u.5	25495418	COBRA-like protein 1
mtr-u.5	25495419	protein COBRA
sly-u.5	101260119	COBRA-like protein 4
sly-u.5	101260090	COBRA-like protein 6
sly-u.5	101253146	COBRA-like protein 4
sot-r.1	102604326	COBRA-like protein 4
sot-r.1	102590522	COBRA-like protein 4
nta-r.1	107807501	protein COBRA-like
nta-r.1	107773615	COBRA-like protein 4
nta-r.1	107763917	COBRA-like protein 6
osa-u.5	4343845	COBRA-like protein 6
osa-u.5	4343844	COBRA-like protein 1
zma-u.5	541793	brittle stalk-2-like protein 3
zma-u.5	100037800	brittle stalk-2-like protein 7
zma-u.5	100037799	brittle stalk-2-like protein 6
tae-r.2	123049694	COBRA-like protein 7
tae-r.2	123102634	COBRA-like protein 5
tae-r.2	123096176	COBRA-like protein 2
hvu-r.1	123452279	COBRA-like protein 3
hvu-r.1	123447814	COBRA-like protein 2
hvu-r.1	123442574	COBRA-like protein 5
sbi-r.1	8079020	COBRA-like protein 6
sbi-r.1	8070042	COBRA-like protein 5
bdi-r.1	100829328	COBRA-like protein 2
bdi-r.1	100829029	COBRA-like protein 5

Top 50 coexpressed genes to 106399754 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106399754 (bna-r.1 coexpression data)

CoexMap"106399754"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0052324 [list] [network] plant-type cell wall cellulose biosynthetic process	(27 genes)	IEA
GO:0010215 [list] [network] cellulose microfibril organization	(41 genes)	IEA

GO CC

GO:0005886 [list] [network] plasma membrane

(2955 genes)

IEA

GO MF

Protein

XP_013695665.2 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, vacu 3, golg_plas 3, nucl 1, E.R._vacu 1

(predict for XP_013695665.2)

Subcellular
localization
TargetP

scret 9

(predict for XP_013695665.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106399754	bna-r.1 for 125587582	bna-r.1 for 106453132	bna-r.1 for 106432032	bra-r.6 for 103875066	bra-r.6 for 103836309	bra-r.6 for 103849801	ath-u.5 for COB	ath-u.5 for COBL6	ath-u.5 for IRX6	ghi-r.1 for 107946555	cit-r.1 for 102609762	cit-r.1 for 102610075	gma-u.5 for 100815779	gma-u.5 for 100811581	gma-u.5 for 100815926	vvi-u.5 for 100258803	vvi-u.5 for 100263971	mtr-u.5 for 25495418	mtr-u.5 for 25495419	sly-u.5 for 101260119	sly-u.5 for 101260090	sly-u.5 for 101253146	sot-r.1 for 102604326	sot-r.1 for 102590522	nta-r.1 for 107807501	nta-r.1 for 107773615	nta-r.1 for 107763917	osa-u.5 for 4343845	osa-u.5 for 4343844	zma-u.5 for 541793	zma-u.5 for 100037800	zma-u.5 for 100037799	tae-r.2 for 123049694	tae-r.2 for 123102634	tae-r.2 for 123096176	hvu-r.1 for 123452279	hvu-r.1 for 123447814	hvu-r.1 for 123442574	sbi-r.1 for 8079020	sbi-r.1 for 8070042	bdi-r.1 for 100829328	bdi-r.1 for 100829029

Ortholog

Ortholog ID: 307

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

COB

COBL6

COBL2

Function^*

COBRA-like protein 2

COBRA-like protein 6

COBRA-like protein 4

protein COBRA

COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family

COBRA-like protein 6 precursor

COBRA-like protein 2 precursor

COBRA-like protein 1

COBRA-like protein 2

protein COBRA-like

COBRA-like protein 4

protein COBRA

protein COBRA-like

COBRA-like protein 4-like

protein COBRA

COBRA-like protein 4

COBRA-like protein 2

COBRA-like protein 1

protein COBRA

COBRA-like protein 4

protein COBRA-like

COBRA-like protein 6

COBRA-like protein 4

protein COBRA-like

COBRA-like protein 4

COBRA-like protein 6

COBRA-like protein 1

COBRA-like protein 5

brittle stalk-2-like protein 3

brittle stalk-2-like protein 6

brittle stalk-2-like protein 4

COBRA-like protein 3

COBRA-like protein 1

COBRA-like protein 3

COBRA-like protein 2

COBRA-like protein 6

COBRA-like protein 3

COBRA-like protein 5

COBRA-like protein 3

COBRA-like protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	4
bra01250	Biosynthesis of nucleotide sugars	3
bra00053	Ascorbate and aldarate metabolism	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00999	Biosynthesis of various plant secondary metabolites	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	3
ath04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00051	Fructose and mannose metabolism	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00051	Fructose and mannose metabolism	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2
mtr03008	Ribosome biogenesis in eukaryotes	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00900	Terpenoid backbone biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

106399754

106362383

106346245

103856152

103860552

836213

837508

822697

107951886

107955737

102609762

102610075

100815926

100782876

100783410

100263971

100263436

100244586

7480591

7480590

25495418

25495419

101253146

101251844

112940047

102604326

102598920

102584372

107807501

107807502

107806738

4343845

4343844

4333114

541793

100037799

100037798

123105056

123188006

123128916

123447814

123429721

123403280

8070042

8085923

100823628

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Species	bna	bra	ath	ghi	cit	gma	vvi	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	ppo	cre
Paralog	4	3	3	1	2	3	2	2	3	2	3	2	3	3	3	2	2	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106399754 (bna-r.1 coexpression data)

Top 50 enrichment test to 106399754 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**