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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106401814   transcription factor efuD 
 ath-u.5   AT4G20340   Transcription factor TFIIE, alpha subunit 
 ath-u.5   AT1G03280   Transcription factor TFIIE, alpha subunit 
 gma-u.5   100810405   transcription initiation factor IIE subunit alpha 
 gma-u.5   100799341   general transcription factor IIE subunit 1 
 gma-u.5   100793678   general transcription factor IIE subunit 1 
 vvi-u.5   100263299   uncharacterized LOC100263299 
 ppo-u.5   18105526   uncharacterized LOC18105526 
 ppo-u.5   7462650   transcription initiation factor IIE subunit alpha 
 mtr-u.5   11408174   general transcription factor IIE subunit 1 
 mtr-u.5   120580122   transcription initiation factor IIE subunit alpha 
 sly-u.5   101258739   uncharacterized LOC101258739 
 osa-u.5   9270379   uncharacterized LOC9270379 
 osa-u.5   4345330   uncharacterized LOC4345330 
 zma-u.5   100273603   Transcription factor TFIIE alpha subunit 
 zma-u.5   100273074   uncharacterized LOC100273074 

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Top 50 coexpressed genes to 106401814 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106401814 (bna-r.1 coexpression data)

CoexMap"106401814"


bnaLOC106401814 | Entrez gene ID : 106401814    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 2 3 1 2 2 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03022 [list] [network] Basal transcription factors (161 genes)
GO BP
GO:0001113 [list] [network] transcription open complex formation at RNA polymerase II promoter  (6 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (114 genes)  IEA  
GO CC
GO:0005673 [list] [network] transcription factor TFIIE complex  (10 genes)  IEA  
GO MF
Protein XP_013697868.2 [sequence] [blastp]
XP_048613651.1 [sequence] [blastp]
XP_048613652.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  chlo 1,  mito 1,  cysk 1,  chlo_mito 1  (predict for XP_013697868.2)
cyto 5,  nucl 3,  chlo 1,  mito 1,  cysk 1,  chlo_mito 1  (predict for XP_048613651.1)
cyto 5,  nucl 3,  chlo 1,  mito 1,  cysk 1,  chlo_mito 1  (predict for XP_048613652.1)
Subcellular
localization
TargetP
scret 7,  other 3  (predict for XP_013697868.2)
scret 7,  other 3  (predict for XP_048613651.1)
scret 7,  other 3  (predict for XP_048613652.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106401814
ath-u.5
for
AT4G20340
ath-u.5
for
AT1G03280
gma-u.5
for
100810405
gma-u.5
for
100799341
gma-u.5
for
100793678
vvi-u.5
for
100263299
ppo-u.5
for
18105526
ppo-u.5
for
7462650
mtr-u.5
for
11408174
mtr-u.5
for
120580122
sly-u.5
for
101258739
osa-u.5
for
9270379
osa-u.5
for
4345330
zma-u.5
for
100273603
zma-u.5
for
100273074


Ortholog ID: 3825
Species bna bra bra ath ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta zma zma tae hvu sbi bdi cre
Symbol LOC106423057 LOC103857238 LOC103844523 AT4G20340 LOC107937293 LOC107912656 LOC102613584 LOC100793678 LOC100799341 LOC100263299 LOC18105526 LOC7462650 LOC120580122 LOC11408174 LOC101258739 LOC102579587 LOC107814206 LOC107824528 LOC100273074 LOC100273603 LOC123063592 LOC123445630 LOC8067870 LOC100834936 CHLRE_11g481550v5
Function* transcription factor efuD-like transcription initiation factor IIE subunit alpha transcription initiation factor IIE subunit alpha Transcription factor TFIIE, alpha subunit transcription initiation factor IIE subunit alpha transcription initiation factor IIE subunit alpha uncharacterized LOC102613584 general transcription factor IIE subunit 1 general transcription factor IIE subunit 1 uncharacterized LOC100263299 uncharacterized LOC18105526 transcription initiation factor IIE subunit alpha transcription initiation factor IIE subunit alpha general transcription factor IIE subunit 1 uncharacterized LOC101258739 transcription initiation factor IIE subunit alpha uncharacterized LOC107814206 uncharacterized LOC107824528 uncharacterized LOC100273074 Transcription factor TFIIE alpha subunit general transcription factor IIE subunit 1 general transcription factor IIE subunit 1 transcription initiation factor IIE subunit alpha transcription initiation factor IIE subunit alpha uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00061 Fatty acid biosynthesis 2
ghi00071 Fatty acid degradation 2
ghi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 4
gma03420 Nucleotide excision repair 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03008 Ribosome biogenesis in eukaryotes 2
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 6
tae03250 Viral life cycle - HIV-1 3
tae04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106423057 103857238 103844523 827782 107937293 107912656 102613584 100793678 100799341 100263299 18105526 7462650 120580122 11408174 101258739 102579587 107814206 107824528 100273074 100273603 123063592 123445630 8067870 100834936 5722945
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