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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106405624   alanine--tRNA ligase-like 
 bna-r.1   106439042   alanine--tRNA ligase 
 bna-r.1   106380899   alanine--tRNA ligase-like 
 bna-r.1   106380901   alanine--tRNA ligase-like 
 bra-r.6   103871359   alanine--tRNA ligase 
 bra-r.6   103849540   alanine--tRNA ligase 
 bra-r.6   103832888   alanine--tRNA ligase 
 ath-u.5   ALATS   Alanyl-tRNA synthetase 
 ghi-r.1   107886828   alanine--tRNA ligase 
 ghi-r.1   107886901   alanine--tRNA ligase 
 ghi-r.1   107937588   alanine--tRNA ligase-like 
 cit-r.1   102622589   alanine--tRNA ligase 
 gma-u.5   100805071   alanine--tRNA ligase-like 
 gma-u.5   100788271   alanine--tRNA ligase 
 vvi-u.5   100249161   alanine--tRNA ligase 
 vvi-u.5   100251111   alanine--tRNA ligase 
 ppo-u.5   7486389   alanine--tRNA ligase 
 mtr-u.5   11441602   alanine--tRNA ligase 
 mtr-u.5   11443642   alanine--tRNA ligase 
 sly-u.5   101244561   alanine--tRNA ligase 
 sot-r.1   102591893   alanine--tRNA ligase 
 nta-r.1   107813253   alanine--tRNA ligase 
 nta-r.1   107804690   alanine--tRNA ligase-like 
 osa-u.5   4348211   alanine--tRNA ligase 
 zma-u.5   103640907   alanine--tRNA ligase 
 tae-r.2   123091754   alanine--tRNA ligase 
 tae-r.2   123094083   alanine--tRNA ligase 
 tae-r.2   123150933   alanine--tRNA ligase 
 hvu-r.1   123448252   alanine--tRNA ligase-like 
 hvu-r.1   123450020   alanine--tRNA ligase-like 
 sbi-r.1   8064844   alanine--tRNA ligase 
 sbi-r.1   8058186   alanine--tRNA ligase 
 bdi-r.1   100837273   alanine--tRNA ligase 
 cre-r.1   CHLRE_02g143200v5   uncharacterized protein 

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Top 50 coexpressed genes to 106405624 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106405624 (bna-r.1 coexpression data)

CoexMap"106405624"


bnaLOC106405624 | Entrez gene ID : 106405624    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 1 3 1 2 2 1 2 1 1 2 1 1 3 2 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00970 [list] [network] Aminoacyl-tRNA biosynthesis (226 genes)
GO BP
GO:0006419 [list] [network] alanyl-tRNA aminoacylation  (14 genes)  IEA  
GO:0006400 [list] [network] tRNA modification  (216 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1821 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (1831 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0004813 [list] [network] alanine-tRNA ligase activity  (14 genes)  IEA  
GO:0016597 [list] [network] amino acid binding  (48 genes)  IEA  
GO:0002161 [list] [network] aminoacyl-tRNA deacylase activity  (52 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5995 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (12766 genes)  IEA  
Protein XP_048617663.1 [sequence] [blastp]
XP_048617664.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_048617663.1)
chlo 9  (predict for XP_048617664.1)
Subcellular
localization
TargetP
mito 8,  chlo 5  (predict for XP_048617663.1)
mito 8,  chlo 5  (predict for XP_048617664.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106405624
bna-r.1
for
106439042
bna-r.1
for
106380899
bna-r.1
for
106380901
bra-r.6
for
103871359
bra-r.6
for
103849540
bra-r.6
for
103832888
ath-u.5
for
ALATS
ghi-r.1
for
107886828
ghi-r.1
for
107886901
ghi-r.1
for
107937588
cit-r.1
for
102622589
gma-u.5
for
100805071
gma-u.5
for
100788271
vvi-u.5
for
100249161
vvi-u.5
for
100251111
ppo-u.5
for
7486389
mtr-u.5
for
11441602
mtr-u.5
for
11443642
sly-u.5
for
101244561
sot-r.1
for
102591893
nta-r.1
for
107813253
nta-r.1
for
107804690
osa-u.5
for
4348211
zma-u.5
for
103640907
tae-r.2
for
123091754
tae-r.2
for
123094083
tae-r.2
for
123150933
hvu-r.1
for
123448252
hvu-r.1
for
123450020
sbi-r.1
for
8064844
sbi-r.1
for
8058186
bdi-r.1
for
100837273
cre-r.1
for
CHLRE_02g143200v5


Ortholog ID: 4828
Species bna bna bna bra bra bra ath ghi ghi ghi cit gma gma vvi vvi ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu hvu sbi sbi bdi cre
Symbol LOC106439042 LOC106380899 LOC106380901 LOC103871359 LOC103849540 LOC103832888 ALATS LOC107886901 LOC107937588 LOC107946129 LOC102622589 LOC100805071 LOC100788271 LOC100249161 LOC100251111 LOC7486389 LOC11441602 LOC11443642 LOC101244561 LOC102591893 LOC107813253 LOC107804690 LOC4348211 LOC103640907 LOC123091754 LOC123094083 LOC123150933 LOC123448252 LOC123450020 LOC8064844 LOC8058186 LOC100837273 CHLRE_02g143200v5
Function* alanine--tRNA ligase alanine--tRNA ligase-like alanine--tRNA ligase-like alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase Alanyl-tRNA synthetase alanine--tRNA ligase alanine--tRNA ligase-like alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase-like alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase-like alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase-like alanine--tRNA ligase-like alanine--tRNA ligase alanine--tRNA ligase alanine--tRNA ligase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03013 Nucleocytoplasmic transport 2
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03013 Nucleocytoplasmic transport 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 5
ath03082 ATP-dependent chromatin remodeling 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03040 Spliceosome 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 3
vvi03013 Nucleocytoplasmic transport 3
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 6
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 4
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot00220 Arginine biosynthesis 2
sot00250 Alanine, aspartate and glutamate metabolism 2
sot03013 Nucleocytoplasmic transport 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
nta00270 Cysteine and methionine metabolism 2
nta00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta00270 Cysteine and methionine metabolism 2
nta00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 4
zma03013 Nucleocytoplasmic transport 3
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 2
tae03082 ATP-dependent chromatin remodeling 2
tae03040 Spliceosome 2
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03040 Spliceosome 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03015 mRNA surveillance pathway 2
sbi03250 Viral life cycle - HIV-1 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 7
cre01230 Biosynthesis of amino acids 5
cre00290 Valine, leucine and isoleucine biosynthesis 3
cre01210 2-Oxocarboxylic acid metabolism 3
cre00966 Glucosinolate biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106439042 106380899 106380901 103871359 103849540 103832888 841442 107886901 107937588 107946129 102622589 100805071 100788271 100249161 100251111 7486389 11441602 11443642 101244561 102591893 107813253 107804690 4348211 103640907 123091754 123094083 123150933 123448252 123450020 8064844 8058186 100837273 5720460
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