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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106406408   small nuclear ribonucleoprotein Sm D2-like 
 ath-u.5   AT2G47640   Small nuclear ribonucleoprotein family protein 
 ath-u.5   AT3G62840   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100500203   putative small nuclear ribonucleoprotein Sm D2 
 gma-u.5   100792526   small nuclear ribonucleoprotein Sm D2 
 gma-u.5   100793233   probable small nuclear ribonucleoprotein Sm D2-like 
 vvi-u.5   100258827   uncharacterized LOC100258827 
 ppo-u.5   7478843   uncharacterized LOC7478843 
 ppo-u.5   7491301   uncharacterized LOC7491301 
 mtr-u.5   11426500   small nuclear ribonucleoprotein Sm D2 
 mtr-u.5   11425290   small nuclear ribonucleoprotein Sm D2 
 sly-u.5   101246377   uncharacterized LOC101246377 
 osa-u.5   4338385   uncharacterized LOC4338385 
 zma-u.5   100193568   uncharacterized LOC100193568 
 zma-u.5   100280773   uncharacterized LOC100280773 
 zma-u.5   100193106   uncharacterized LOC100193106 

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Top 50 coexpressed genes to 106406408 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106406408 (bna-r.1 coexpression data)

CoexMap"106406408"


bnaLOC106406408 | Entrez gene ID : 106406408    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 2 3 1 2 2 1 1 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (90 genes)  IEA  
GO:0008380 [list] [network] RNA splicing  (629 genes)  IEA  
GO CC
GO:0005682 [list] [network] U5 snRNP  (56 genes)  IEA  
GO:0005686 [list] [network] U2 snRNP  (88 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (91 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (102 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (154 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO MF
Protein XP_013702522.2 [sequence] [blastp]
XP_022560791.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  extr 4,  chlo 1,  nucl 1  (predict for XP_013702522.2)
cyto 3,  extr 3,  chlo 2,  nucl 2  (predict for XP_022560791.2)
Subcellular
localization
TargetP
other 9  (predict for XP_013702522.2)
other 9  (predict for XP_022560791.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106406408
ath-u.5
for
AT2G47640
ath-u.5
for
AT3G62840
gma-u.5
for
100500203
gma-u.5
for
100792526
gma-u.5
for
100793233
vvi-u.5
for
100258827
ppo-u.5
for
7478843
ppo-u.5
for
7491301
mtr-u.5
for
11426500
mtr-u.5
for
11425290
sly-u.5
for
101246377
osa-u.5
for
4338385
zma-u.5
for
100193568
zma-u.5
for
100280773
zma-u.5
for
100193106


Ortholog ID: 3790
Species bna bna bra bra ath ath ghi ghi cit cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae hvu hvu sbi sbi bdi cre
Symbol LOC106406408 LOC106420510 LOC103842086 LOC103830369 AT3G62840 AT2G47640 LOC107913510 LOC107918638 LOC102610531 LOC102629583 LOC100793233 LOC100792526 LOC100258827 LOC7478843 LOC7491301 LOC11425290 LOC11426500 LOC101246377 LOC102591954 LOC107831108 LOC107781770 LOC4338385 LOC100193568 LOC100193106 LOC123063612 LOC123093863 LOC123449942 LOC123441091 LOC8054285 LOC8068671 LOC100831115 CHLRE_10g453450v5
Function* small nuclear ribonucleoprotein Sm D2-like small nuclear ribonucleoprotein Sm D2-like small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 uncharacterized LOC102610531 uncharacterized LOC102629583 probable small nuclear ribonucleoprotein Sm D2-like small nuclear ribonucleoprotein Sm D2 uncharacterized LOC100258827 uncharacterized LOC7478843 uncharacterized LOC7491301 small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 uncharacterized LOC101246377 small nuclear ribonucleoprotein Sm D2 uncharacterized LOC107831108 uncharacterized LOC107781770 uncharacterized LOC4338385 uncharacterized LOC100193568 uncharacterized LOC100193106 small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2-like small nuclear ribonucleoprotein Sm D2-like small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra03040 Spliceosome 4
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03040 Spliceosome 3
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 7
ath03040 Spliceosome 4
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
ath03020 RNA polymerase 4
ath03420 Nucleotide excision repair 4
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 3
cit03010 Ribosome 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03040 Spliceosome 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 9
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03010 Ribosome 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03010 Ribosome 7
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03040 Spliceosome 3
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
hvu03040 Spliceosome 4
hvu03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi03040 Spliceosome 3
sbi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 11
sbi03020 RNA polymerase 3
sbi03420 Nucleotide excision repair 3
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03010 Ribosome 6
bdi03420 Nucleotide excision repair 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 17
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106406408 106420510 103842086 103830369 825459 819377 107913510 107918638 102610531 102629583 100793233 100792526 100258827 7478843 7491301 11425290 11426500 101246377 102591954 107831108 107781770 4338385 100193568 100193106 123063612 123093863 123449942 123441091 8054285 8068671 100831115 5724086
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