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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106406925   uncharacterized LOC106406925 
 bna-r.1   106364123   uncharacterized LOC106364123 
 bra-r.6   103837471   uncharacterized LOC103837471 
 ath-u.5   AT5G63460   SAP domain-containing protein 
 ghi-r.1   107912085   uncharacterized LOC107912085 
 ghi-r.1   107924841   uncharacterized LOC107924841 
 ghi-r.1   107939843   uncharacterized LOC107939843 
 cit-r.1   102610778   hypothetical protein 
 gma-u.5   100817629   uncharacterized LOC100817629 
 gma-u.5   100306690   DDA1 and SAP domain-containing protein 
 vvi-u.5   100264568   uncharacterized LOC100264568 
 ppo-u.5   7454549   uncharacterized LOC7454549 
 ppo-u.5   7463122   uncharacterized LOC7463122 
 mtr-u.5   11407454   uncharacterized LOC11407454 
 sly-u.5   101263894   protein LOWER TEMPERATURE 1 
 sot-r.1   102586503   uncharacterized LOC102586503 
 nta-r.1   107767986   protein LOWER TEMPERATURE 1-like 
 nta-r.1   107797350   protein LOWER TEMPERATURE 1 
 osa-u.5   4350522   protein LOWER TEMPERATURE 1 
 osa-u.5   4352144   protein LOWER TEMPERATURE 1 
 zma-u.5   100282101   uncharacterized LOC100282101 
 tae-r.2   123097102   uncharacterized LOC123097102 
 tae-r.2   123091960   uncharacterized LOC123091960 
 tae-r.2   123085963   uncharacterized LOC123085963 
 hvu-r.1   123448555   uncharacterized LOC123448555 
 sbi-r.1   8071826   uncharacterized LOC8071826 
 bdi-r.1   100822373   uncharacterized LOC100822373 
 cre-r.1   CHLRE_02g097334v5   uncharacterized protein 

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Top 50 coexpressed genes to 106406925 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106406925 (bna-r.1 coexpression data)

CoexMap"106406925"


bnaLOC106406925 | Entrez gene ID : 106406925    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 3 1 2 1 2 1 1 1 2 2 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032436 [list] [network] positive regulation of proteasomal ubiquitin-dependent protein catabolic process  (127 genes)  IEA  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (46 genes)  IEA  
GO MF
Protein XP_013703127.1 [sequence] [blastp]
XP_013703128.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto_nucl 5,  nucl_plas 4  (predict for XP_013703127.1)
nucl 8,  cyto_nucl 5,  nucl_plas 4  (predict for XP_013703128.1)
Subcellular
localization
TargetP
chlo 8,  other 3  (predict for XP_013703127.1)
chlo 8,  other 3  (predict for XP_013703128.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106406925
bna-r.1
for
106364123
bra-r.6
for
103837471
ath-u.5
for
AT5G63460
ghi-r.1
for
107912085
ghi-r.1
for
107924841
ghi-r.1
for
107939843
cit-r.1
for
102610778
gma-u.5
for
100817629
gma-u.5
for
100306690
vvi-u.5
for
100264568
ppo-u.5
for
7454549
ppo-u.5
for
7463122
mtr-u.5
for
11407454
sly-u.5
for
101263894
sot-r.1
for
102586503
nta-r.1
for
107767986
nta-r.1
for
107797350
osa-u.5
for
4350522
osa-u.5
for
4352144
zma-u.5
for
100282101
tae-r.2
for
123097102
tae-r.2
for
123091960
tae-r.2
for
123085963
hvu-r.1
for
123448555
sbi-r.1
for
8071826
bdi-r.1
for
100822373
cre-r.1
for
CHLRE_02g097334v5


Ortholog ID: 6111
Species bna bra ath ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106406925 LOC103837471 AT5G63460 LOC107924841 LOC107939843 LOC107922491 LOC102610778 LOC100817629 LOC100306690 LOC100264568 LOC7454549 LOC7463122 LOC11407454 LOC101263894 LOC102586503 LOC107767986 LOC107797350 LOC4350522 LOC4352144 LOC100282101 LOC123097102 LOC123091960 LOC123085963 LOC123448555 LOC8071826 LOC100822373 CHLRE_02g097334v5
Function* uncharacterized LOC106406925 uncharacterized LOC103837471 SAP domain-containing protein uncharacterized LOC107924841 uncharacterized LOC107939843 uncharacterized LOC107922491 hypothetical protein uncharacterized LOC100817629 DDA1 and SAP domain-containing protein uncharacterized LOC100264568 uncharacterized LOC7454549 uncharacterized LOC7463122 uncharacterized LOC11407454 protein LOWER TEMPERATURE 1 uncharacterized LOC102586503 protein LOWER TEMPERATURE 1-like protein LOWER TEMPERATURE 1 protein LOWER TEMPERATURE 1 protein LOWER TEMPERATURE 1 uncharacterized LOC100282101 uncharacterized LOC123097102 uncharacterized LOC123091960 uncharacterized LOC123085963 uncharacterized LOC123448555 uncharacterized LOC8071826 uncharacterized LOC100822373 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 4
bra03015 mRNA surveillance pathway 2
bra04136 Autophagy - other 2
bra04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03015 mRNA surveillance pathway 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 5
mtr04120 Ubiquitin mediated proteolysis 3
mtr03083 Polycomb repressive complex 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03020 RNA polymerase 3
sly03420 Nucleotide excision repair 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 5
sot03083 Polycomb repressive complex 2
sot04141 Protein processing in endoplasmic reticulum 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
zma03420 Nucleotide excision repair 2
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae03040 Spliceosome 7
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03018 RNA degradation 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 6
cre03410 Base excision repair 4
cre03420 Nucleotide excision repair 4
cre03430 Mismatch repair 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106406925 103837471 836465 107924841 107939843 107922491 102610778 100817629 100306690 100264568 7454549 7463122 11407454 101263894 102586503 107767986 107797350 4350522 4352144 100282101 123097102 123091960 123085963 123448555 8071826 100822373 5725392
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