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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G43210   Excinuclease ABC, C subunit, N-terminal 
 gma-u.5   100805152   structure-specific endonuclease subunit slx1 
 vvi-u.5   109121452   structure-specific endonuclease subunit slx1 
 ppo-u.5   7480056   structure-specific endonuclease subunit SLX1 
 ppo-u.5   7465138   structure-specific endonuclease subunit slx1 
 mtr-u.5   25479421   structure-specific endonuclease subunit slx1 
 sly-u.5   101261747   structure-specific endonuclease subunit slx1 
 osa-u.5   4351480   structure-specific endonuclease subunit slx1 
 osa-u.5   9267637   structure-specific endonuclease subunit slx1 
 zma-u.5   100284153   holiday junction resolvase, S1x1p, URI domain nuclease 

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Top 50 coexpressed genes to AT5G43210 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G43210 (ath-u.5 coexpression data)

CoexMap"106409123"


bnaLOC106409123 | Entrez gene ID : 106409123    
Species ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 1 1 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03460 [list] [network] Fanconi anemia pathway (105 genes)
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (307 genes)  IEA  
GO CC
GO:0033557 [list] [network] Slx1-Slx4 complex  (9 genes)  IEA  
GO MF
GO:0008821 [list] [network] crossover junction DNA endonuclease activity  (15 genes)  IEA  
GO:0017108 [list] [network] 5'-flap endonuclease activity  (29 genes)  IEA  
Protein XP_013705258.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  mito 1,  chlo 1,  cyto_mito 1,  golg_plas 1  (predict for XP_013705258.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_013705258.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT5G43210

.
gma-u.5
for
100805152

.
vvi-u.5
for
109121452

.
ppo-u.5
for
7480056

.
ppo-u.5
for
7465138

.
mtr-u.5
for
25479421

.
sly-u.5
for
101261747

.
osa-u.5
for
4351480

.
osa-u.5
for
9267637

.
zma-u.5
for
100284153

.


Ortholog ID: 10354
Species ath gma sly osa osa zma vvi ppo mtr tae tae hvu ghi ghi cre sbi sot cit bdi nta nta
Symbol AT5G43210 LOC100805152 LOC101261747 LOC9267637 LOC4351480 LOC100284153 LOC109121452 LOC7465138 LOC25479421 LOC123096607 LOC123086368 LOC123446253 LOC107950738 LOC107918843 CHLRE_09g412700v5 LOC8070342 LOC102598472 LOC102609773 LOC100842997 LOC107774523 LOC107777740
Function* Excinuclease ABC, C subunit, N-terminal structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit slx1 holiday junction resolvase, S1x1p, URI domain nuclease structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit slx1 uncharacterized protein structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit SLX1 structure-specific endonuclease subunit slx1 structure-specific endonuclease subunit slx1 uncharacterized LOC107774523 uncharacterized LOC107777740
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 10
osa03020 RNA polymerase 2
osa03420 Nucleotide excision repair 2
osa00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo03250 Viral life cycle - HIV-1 2
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 3
ghi03460 Fanconi anemia pathway 2
ghi00330 Arginine and proline metabolism 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 3
ghi03460 Fanconi anemia pathway 2
ghi00330 Arginine and proline metabolism 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 6
nta00010 Glycolysis / Gluconeogenesis 2
nta00071 Fatty acid degradation 2
nta00350 Tyrosine metabolism 2
nta00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta04142 Lysosome 4
nta04145 Phagosome 4
nta03010 Ribosome 2
nta00740 Riboflavin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834339 100805152 101261747 9267637 4351480 100284153 109121452 7465138 25479421 123096607 123086368 123446253 107950738 107918843 66054899 8070342 102598472 102609773 100842997 107774523 107777740
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