ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106410900	uncharacterized LOC106410900
bna-r.1	106352860	uncharacterized LOC106352860
bra-r.6	103863235	uncharacterized LOC103863235
bra-r.6	103829973	uncharacterized LOC103829973
ath-u.5	emb1967	Forkhead-associated (FHA) domain-containing protein
ath-u.5	AT1G60700	SMAD/FHA domain-containing protein
ghi-r.1	107896857	uncharacterized LOC107896857
ghi-r.1	107913027	uncharacterized LOC107913027
ghi-r.1	107922463	uncharacterized LOC107922463
cit-r.1	102609555	uncharacterized LOC102609555
cit-r.1	102628084	uncharacterized LOC102628084
gma-u.5	100786493	uncharacterized LOC100786493
gma-u.5	100788061	uncharacterized LOC100788061
gma-u.5	100803683	uncharacterized LOC100803683
vvi-u.5	100266115	uncharacterized LOC100266115
vvi-u.5	100254089	uncharacterized LOC100254089
ppo-u.5	7495520	uncharacterized LOC7495520
ppo-u.5	18099231	uncharacterized LOC18099231
ppo-u.5	7490675	uncharacterized LOC7490675
mtr-u.5	11408169	uncharacterized LOC11408169
mtr-u.5	11427381	uncharacterized LOC11427381
sly-u.5	101268409	uncharacterized LOC101268409
sly-u.5	101248257	uncharacterized LOC101248257
sot-r.1	102579889	uncharacterized LOC102579889
sot-r.1	102601992	uncharacterized LOC102601992
nta-r.1	107808314	uncharacterized LOC107808314
nta-r.1	107802610	uncharacterized LOC107802610
nta-r.1	107800439	uncharacterized LOC107800439
osa-u.5	4334454	uncharacterized LOC4334454
osa-u.5	4342619	uncharacterized LOC4342619
zma-u.5	100281563	uncharacterized LOC100281563
zma-u.5	100279210	Forkhead-associated (FHA) domain-containing protein
tae-r.2	123123263	uncharacterized LOC123123263
tae-r.2	123113780	uncharacterized LOC123113780
tae-r.2	123105477	uncharacterized LOC123105477
hvu-r.1	123452785	uncharacterized LOC123452785
sbi-r.1	8081094	uncharacterized LOC8081094
sbi-r.1	8075064	uncharacterized LOC8075064
bdi-r.1	100838325	uncharacterized LOC100838325
bdi-r.1	100821136	uncharacterized LOC100821136
cre-r.1	CHLRE_16g660100v5	uncharacterized protein

Top 50 coexpressed genes to 106410900 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106410900 (bna-r.1 coexpression data)

CoexMap"106410900"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(509 genes)

IEA

GO CC

GO:0071339 [list] [network] MLL1 complex	(7 genes)	IEA
GO:0044545 [list] [network] NSL complex	(13 genes)	IEA
GO:0031011 [list] [network] Ino80 complex	(38 genes)	IEA

GO MF

GO:0002151 [list] [network] G-quadruplex RNA binding	(7 genes)	IEA
GO:0005515 [list] [network] protein binding	(12789 genes)	IEA

Protein

XP_013706984.1 [sequence] [blastp]
XP_013706986.1 [sequence] [blastp]
XP_022560361.1 [sequence] [blastp]
XP_048616594.1 [sequence] [blastp]
XP_048616595.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 2	(predict for XP_013706984.1)
nucl 8, chlo 2	(predict for XP_013706986.1)
nucl 8, chlo 2	(predict for XP_022560361.1)
nucl 8, chlo 2	(predict for XP_048616594.1)
nucl 8, chlo 2	(predict for XP_048616595.1)

Subcellular
localization
TargetP

other 6	(predict for XP_013706984.1)
other 6	(predict for XP_013706986.1)
other 6	(predict for XP_022560361.1)
other 6	(predict for XP_048616594.1)
other 6	(predict for XP_048616595.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106410900	bna-r.1 for 106352860	bra-r.6 for 103863235	bra-r.6 for 103829973	ath-u.5 for emb1967	ath-u.5 for AT1G60700	ghi-r.1 for 107896857	ghi-r.1 for 107913027	ghi-r.1 for 107922463	cit-r.1 for 102609555	cit-r.1 for 102628084	gma-u.5 for 100786493	gma-u.5 for 100788061	gma-u.5 for 100803683	vvi-u.5 for 100266115	vvi-u.5 for 100254089	ppo-u.5 for 7495520	ppo-u.5 for 18099231	ppo-u.5 for 7490675	mtr-u.5 for 11408169	mtr-u.5 for 11427381	sly-u.5 for 101268409	sly-u.5 for 101248257	sot-r.1 for 102579889	sot-r.1 for 102601992	nta-r.1 for 107808314	nta-r.1 for 107802610	nta-r.1 for 107800439	osa-u.5 for 4334454	osa-u.5 for 4342619	zma-u.5 for 100281563	zma-u.5 for 100279210	tae-r.2 for 123123263	tae-r.2 for 123113780	tae-r.2 for 123105477	hvu-r.1 for 123452785	sbi-r.1 for 8081094	sbi-r.1 for 8075064	bdi-r.1 for 100838325	bdi-r.1 for 100821136	cre-r.1 for CHLRE_16g660100v5

Ortholog

Ortholog ID: 3470

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

emb1967

Function^*

uncharacterized LOC106445460

uncharacterized LOC103863235

uncharacterized LOC103829973

Forkhead-associated (FHA) domain-containing protein

SMAD/FHA domain-containing protein

uncharacterized LOC107896857

uncharacterized LOC107913027

uncharacterized LOC107922463

uncharacterized LOC102609555

uncharacterized LOC102628084

uncharacterized LOC100786493

uncharacterized LOC100788061

uncharacterized LOC100779823

uncharacterized LOC100266115

uncharacterized LOC100254089

uncharacterized LOC7495520

uncharacterized LOC18099231

uncharacterized LOC7490675

uncharacterized LOC11408169

uncharacterized LOC11427381

uncharacterized LOC101268409

uncharacterized LOC101248257

uncharacterized LOC102579889

uncharacterized LOC102601992

uncharacterized LOC107808314

uncharacterized LOC107800439

uncharacterized LOC107797076

uncharacterized LOC4334454

uncharacterized LOC4342619

uncharacterized LOC100281563

Forkhead-associated (FHA) domain-containing protein

uncharacterized LOC123123263

uncharacterized LOC123113780

uncharacterized LOC123105477

uncharacterized LOC123452785

uncharacterized LOC8081094

uncharacterized LOC8075064

uncharacterized LOC100838325

uncharacterized LOC100821136

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00561	Glycerolipid metabolism	3
mtr00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	4
sly03008	Ribosome biogenesis in eukaryotes	2
sly03020	RNA polymerase	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04148	Efferocytosis	2
sot00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	4
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00051	Fructose and mannose metabolism	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00051	Fructose and mannose metabolism	2
nta04075	Plant hormone signal transduction	2
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	2
sbi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

106445460

103863235

103829973

824602

842364

107896857

107913027

107922463

102609555

102628084

100786493

100788061

100779823

100266115

100254089

7495520

18099231

7490675

11408169

11427381

101268409

101248257

102579889

102601992

107808314

107800439

107797076

4334454

4342619

100281563

100279210

123123263

123113780

123105477

123452785

8081094

8075064

100838325

100821136

66056563

The preparation time of this page was 0.4 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	2	2	3	2	3	2	3	2	2	2	3	2	2	3	1	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106410900 (bna-r.1 coexpression data)

Top 50 enrichment test to 106410900 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**