ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	111208182	DNA-directed RNA polymerase III subunit rpc6-like
bna-r.1	106348312	DNA-directed RNA polymerase III subunit rpc6
bra-r.6	103874238	DNA-directed RNA polymerase III subunit rpc6
ghi-r.1	107951540	DNA-directed RNA polymerase III subunit RPC6
ghi-r.1	107910529	DNA-directed RNA polymerase III subunit RPC6
cit-r.1	102610477	uncharacterized LOC102610477
cit-r.1	102628866	uncharacterized LOC102628866
gma-u.5	100789276	probable DNA-directed RNA polymerase III subunit RPC6
gma-u.5	100810279	DNA-directed RNA polymerase III subunit RPC6
gma-u.5	100783276	DNA-directed RNA polymerase III subunit RPC6
vvi-u.5	100247314	uncharacterized LOC100247314
ppo-u.5	18096721	uncharacterized LOC18096721
mtr-u.5	112416780	DNA-directed RNA polymerase III subunit RPC6
mtr-u.5	25479433	DNA-directed RNA polymerase III subunit rpc6
sly-u.5	101248509	uncharacterized LOC101248509
sot-r.1	102589765	DNA-directed RNA polymerase III subunit rpc6
nta-r.1	107797154	uncharacterized LOC107797154
nta-r.1	107828615	uncharacterized LOC107828615
nta-r.1	107811297	uncharacterized LOC107811297
osa-u.5	4341464	DNA-directed RNA polymerase III subunit RPC6
zma-u.5	100382351	DNA binding
zma-u.5	100281261	uncharacterized LOC100281261
zma-u.5	100284691	uncharacterized LOC100284691
tae-r.2	123161360	DNA-directed RNA polymerase III subunit RPC6
tae-r.2	123148172	DNA-directed RNA polymerase III subunit RPC6-like
tae-r.2	123165531	DNA-directed RNA polymerase III subunit RPC6-like
hvu-r.1	123407759	DNA-directed RNA polymerase III subunit RPC6-like
sbi-r.1	8065073	DNA-directed RNA polymerase III subunit RPC6
bdi-r.1	100840897	DNA-directed RNA polymerase III subunit rpc6
cre-r.1	CHLRE_07g314950v5	uncharacterized protein

Annotation

functional annotation

KEGG

bna03020 [list] [network] RNA polymerase (161 genes)

GO BP

GO:0006383 [list] [network] transcription by RNA polymerase III

(76 genes)

IEA

GO CC

GO:0005666 [list] [network] RNA polymerase III complex

(74 genes)

IEA

GO MF

Protein

XP_048595394.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, nucl 2, chlo 1

(predict for XP_048595394.1)

Subcellular
localization
TargetP

other 4, mito 4

(predict for XP_048595394.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 111208182	bna-r.1 for 106348312	bra-r.6 for 103874238	ghi-r.1 for 107951540	ghi-r.1 for 107910529	cit-r.1 for 102610477	cit-r.1 for 102628866	gma-u.5 for 100789276	gma-u.5 for 100810279	gma-u.5 for 100783276	vvi-u.5 for 100247314	ppo-u.5 for 18096721	mtr-u.5 for 112416780	mtr-u.5 for 25479433	sly-u.5 for 101248509	sot-r.1 for 102589765	nta-r.1 for 107797154	nta-r.1 for 107828615	nta-r.1 for 107811297	osa-u.5 for 4341464	zma-u.5 for 100382351	zma-u.5 for 100281261	zma-u.5 for 100284691	tae-r.2 for 123161360	tae-r.2 for 123148172	tae-r.2 for 123165531	hvu-r.1 for 123407759	sbi-r.1 for 8065073	bdi-r.1 for 100840897	cre-r.1 for CHLRE_07g314950v5

Ortholog

Ortholog ID: 4442

Species

bna

bra

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

DNA-directed RNA polymerase III subunit rpc6-like

DNA-directed RNA polymerase III subunit rpc6

DNA-directed RNA polymerase III subunit RPC6

uncharacterized LOC102610477

uncharacterized LOC102628866

probable DNA-directed RNA polymerase III subunit RPC6

DNA-directed RNA polymerase III subunit RPC6

uncharacterized LOC100247314

uncharacterized LOC18096721

DNA-directed RNA polymerase III subunit RPC6

DNA-directed RNA polymerase III subunit rpc6

uncharacterized LOC101248509

DNA-directed RNA polymerase III subunit rpc6

uncharacterized LOC107797154

uncharacterized LOC107828615

uncharacterized LOC107809998

DNA-directed RNA polymerase III subunit RPC6

DNA binding

uncharacterized LOC100281261

uncharacterized LOC100284691

DNA-directed RNA polymerase III subunit RPC6

DNA-directed RNA polymerase III subunit RPC6-like

DNA-directed RNA polymerase III subunit RPC6

DNA-directed RNA polymerase III subunit rpc6

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	4
ghi03020	RNA polymerase	2
ghi03010	Ribosome	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	9
cit03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	9
cit03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	5
gma04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2
gma04145	Phagosome	2
gma04517	IgSF CAM signaling	2
gma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	5
sly03040	Spliceosome	3
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03008	Ribosome biogenesis in eukaryotes	2
sot03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	5
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	4
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	3
sbi03013	Nucleocytoplasmic transport	2
sbi03040	Spliceosome	2
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2
cre03020	RNA polymerase	2

Expression

Expression pattern

Entrez Gene ID^*

111208182

106348312

103874238

107951540

107910529

102610477

102628866

100789276

100810279

100783276

100247314

18096721

112416780

25479433

101248509

102589765

107797154

107828615

107809998

4341464

100382351

100281261

100284691

123161360

123165531

123407759

8065073

100840897

5726526

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 111208182 (bna-r.1 coexpression data)

Top 50 enrichment test to 111208182 (bna-r.1 coexpression data)


Species	bna	bra	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	ath
Paralog	2	1	2	2	3	1	1	2	1	1	3	1	3	3	1	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 111208182 (bna-r.1 coexpression data)

Top 50 enrichment test to 111208182 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**