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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g314950v5   uncharacterized protein 
 gma-u.5   100810279   DNA-directed RNA polymerase III subunit RPC6 
 gma-u.5   100783276   DNA-directed RNA polymerase III subunit RPC6 
 gma-u.5   100789276   probable DNA-directed RNA polymerase III subunit RPC6 
 sly-u.5   101248509   uncharacterized LOC101248509 
 osa-u.5   4341464   DNA-directed RNA polymerase III subunit RPC6 
 zma-u.5   100281261   uncharacterized LOC100281261 
 zma-u.5   100284691   uncharacterized LOC100284691 
 zma-u.5   100382351   DNA binding 
 vvi-u.5   100247314   uncharacterized LOC100247314 
 ppo-u.5   18096721   uncharacterized LOC18096721 
 mtr-u.5   25479433   DNA-directed RNA polymerase III subunit rpc6 
 mtr-u.5   112416780   DNA-directed RNA polymerase III subunit RPC6 

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Top 50 coexpressed genes to CHLRE_07g314950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g314950v5 (cre-r.1 coexpression data)

CoexMap"5726526"


creCHLRE_07g314950v5 | Entrez gene ID : 5726526      
Species cre gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae ath bna ghi
Paralog 1 3 1 1 3 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03020 [list] [network] RNA polymerase (29 genes)
GO BP
GO:0006383 [list] [network] transcription by RNA polymerase III  (15 genes)  IEA  
GO CC
GO:0005666 [list] [network] RNA polymerase III complex  (16 genes)  IEA  
GO MF
Protein XP_001700791.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 2  (predict for XP_001700791.1)
Subcellular
localization
TargetP
other 6  (predict for XP_001700791.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g314950v5

.
gma-u.5
for
100810279

.
gma-u.5
for
100783276

.
gma-u.5
for
100789276

.
sly-u.5
for
101248509

.
osa-u.5
for
4341464

.
zma-u.5
for
100281261

.
zma-u.5
for
100284691

.
zma-u.5
for
100382351

.
vvi-u.5
for
100247314

.
ppo-u.5
for
18096721

.
mtr-u.5
for
25479433

.
mtr-u.5
for
112416780

.


Ortholog ID: 4442
Species gma gma sly osa zma zma bra vvi ppo mtr mtr tae hvu ghi ghi bna cre sbi sot cit cit bdi nta nta
Symbol LOC100789276 LOC100810279 LOC101248509 LOC4341464 LOC100284691 LOC100382351 LOC103874238 LOC100247314 LOC18096721 LOC25479433 LOC112416780 LOC123161360 LOC123407759 LOC107910529 LOC107951540 LOC106348312 CHLRE_07g314950v5 LOC8065073 LOC102589765 LOC102628866 LOC102610477 LOC100840897 LOC107828615 LOC107797154
Function* probable DNA-directed RNA polymerase III subunit RPC6 DNA-directed RNA polymerase III subunit RPC6 uncharacterized LOC101248509 DNA-directed RNA polymerase III subunit RPC6 uncharacterized LOC100284691 DNA binding DNA-directed RNA polymerase III subunit rpc6 uncharacterized LOC100247314 uncharacterized LOC18096721 DNA-directed RNA polymerase III subunit rpc6 DNA-directed RNA polymerase III subunit RPC6 DNA-directed RNA polymerase III subunit RPC6 DNA-directed RNA polymerase III subunit RPC6-like DNA-directed RNA polymerase III subunit RPC6 DNA-directed RNA polymerase III subunit RPC6 DNA-directed RNA polymerase III subunit rpc6 uncharacterized protein DNA-directed RNA polymerase III subunit RPC6 DNA-directed RNA polymerase III subunit rpc6 uncharacterized LOC102628866 uncharacterized LOC102610477 DNA-directed RNA polymerase III subunit rpc6 uncharacterized LOC107828615 uncharacterized LOC107797154
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 5
gma04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma04145 Phagosome 2
gma04517 IgSF CAM signaling 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 5
sly03040 Spliceosome 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 4
ghi03020 RNA polymerase 2
ghi03010 Ribosome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
cre03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03008 Ribosome biogenesis in eukaryotes 2
sot03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 9
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 9
cit03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 5
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100789276 100810279 101248509 4341464 100284691 100382351 103874238 100247314 18096721 25479433 112416780 123161360 123407759 107910529 107951540 106348312 5726526 8065073 102589765 102628866 102610477 100840897 107828615 107797154
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