ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106433381	uncharacterized LOC106433381
bna-r.1	111202979	uncharacterized LOC111202979
bna-r.1	106367588	uncharacterized LOC106367588
bna-r.1	106381164	protein LSM12 homolog B
bra-r.6	103840715	uncharacterized LOC103840715
bra-r.6	103852638	protein LSM12 homolog B
bra-r.6	103829232	uncharacterized LOC103829232
ath-u.5	AT1G24050	RNA-processing, Lsm domain-containing protein
ghi-r.1	107961671	protein LSM12 homolog
ghi-r.1	107952762	protein LSM12 homolog
cit-r.1	102623460	hypothetical protein
gma-u.5	100499950	protein LSM12 homolog
gma-u.5	100306463	uncharacterized LOC100306463
vvi-u.5	100267269	uncharacterized LOC100267269
ppo-u.5	7459059	uncharacterized LOC7459059
ppo-u.5	7457852	uncharacterized LOC7457852
mtr-u.5	11407143	protein LSM12 homolog
sly-u.5	101261222	uncharacterized LOC101261222
sot-r.1	102584334	protein LSM12 homolog
nta-r.1	107815829	uncharacterized LOC107815829
nta-r.1	107764607	uncharacterized LOC107764607
osa-u.5	4330690	uncharacterized LOC4330690
zma-u.5	100216691	uncharacterized LOC100216691
zma-u.5	100216930	uncharacterized LOC100216930
tae-r.2	123145515	protein LSM12 homolog A
tae-r.2	123138262	protein LSM12 homolog A
tae-r.2	123128397	protein LSM12 homolog A
hvu-r.1	123402523	protein LSM12 homolog A
sbi-r.1	8075724	protein LSM12 homolog
bdi-r.1	100839097	protein LSM12 homolog
cre-r.1	CHLRE_10g421850v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_048592690.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, nucl 1, mito 1, extr 1, vacu 1

(predict for XP_048592690.1)

Subcellular
localization
TargetP

other 9

(predict for XP_048592690.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106433381	bna-r.1 for 111202979	bna-r.1 for 106367588	bna-r.1 for 106381164	bra-r.6 for 103840715	bra-r.6 for 103852638	bra-r.6 for 103829232	ath-u.5 for AT1G24050	ghi-r.1 for 107961671	ghi-r.1 for 107952762	cit-r.1 for 102623460	gma-u.5 for 100499950	gma-u.5 for 100306463	vvi-u.5 for 100267269	ppo-u.5 for 7459059	ppo-u.5 for 7457852	mtr-u.5 for 11407143	sly-u.5 for 101261222	sot-r.1 for 102584334	nta-r.1 for 107815829	nta-r.1 for 107764607	osa-u.5 for 4330690	zma-u.5 for 100216691	zma-u.5 for 100216930	tae-r.2 for 123145515	tae-r.2 for 123138262	tae-r.2 for 123128397	hvu-r.1 for 123402523	sbi-r.1 for 8075724	bdi-r.1 for 100839097	cre-r.1 for CHLRE_10g421850v5

Ortholog

Ortholog ID: 6140

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC106433381

uncharacterized LOC106367588

protein LSM12 homolog B

uncharacterized LOC103840715

protein LSM12 homolog B

uncharacterized LOC103829232

RNA-processing, Lsm domain-containing protein

protein LSM12 homolog

hypothetical protein

protein LSM12 homolog

uncharacterized LOC100306463

uncharacterized LOC100267269

uncharacterized LOC7459059

uncharacterized LOC7457852

protein LSM12 homolog

uncharacterized LOC101261222

protein LSM12 homolog

uncharacterized LOC107815829

uncharacterized LOC107764607

uncharacterized LOC4330690

uncharacterized LOC100216691

uncharacterized LOC100216930

protein LSM12 homolog A

protein LSM12 homolog

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	6
bna03040	Spliceosome	6
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	6
bna03040	Spliceosome	6
bna03010	Ribosome	5
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	6
bna04070	Phosphatidylinositol signaling system	6
bna04075	Plant hormone signal transduction	6
bna04626	Plant-pathogen interaction	6
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	5
ghi03010	Ribosome	4
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	5
ghi03010	Ribosome	4
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2
gma03420	Nucleotide excision repair	2
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	3
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03420	Nucleotide excision repair	2
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr04141	Protein processing in endoplasmic reticulum	2
mtr00010	Glycolysis / Gluconeogenesis	2
mtr00620	Pyruvate metabolism	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	4
sly04141	Protein processing in endoplasmic reticulum	3
sly03010	Ribosome	3
sly03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	4
sot04070	Phosphatidylinositol signaling system	4
sot04075	Plant hormone signal transduction	4
sot04626	Plant-pathogen interaction	4
sot03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03018	RNA degradation	3
nta03010	Ribosome	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	4
tae00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	4
sbi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	8

Expression

Expression pattern

Entrez Gene ID^*

106433381

106367588

106381164

103840715

103852638

103829232

839017

107961671

107952762

102623460

100499950

100306463

100267269

7459059

7457852

11407143

101261222

102584334

107815829

107764607

4330690

100216691

100216930

123145515

123138262

123128397

123402523

8075724

100839097

5728255

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106433381 (bna-r.1 coexpression data)

Top 50 enrichment test to 106433381 (bna-r.1 coexpression data)


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	1	2	1	2	1	2	1	1	1	2	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106433381 (bna-r.1 coexpression data)

Top 50 enrichment test to 106433381 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**