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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106434839   mediator of RNA polymerase II transcription subunit 33B 
 ath-u.5   REF4   reduced epidermal fluorescence 4 
 ath-u.5   RFR1   REF4-related 1 
 gma-u.5   100812937   mediator of RNA polymerase II transcription subunit 33A 
 gma-u.5   100785972   mediator of RNA polymerase II transcription subunit 33B 
 vvi-u.5   100254459   mediator of RNA polymerase II transcription subunit 33A 
 vvi-u.5   100247741   mediator of RNA polymerase II transcription subunit 33A 
 ppo-u.5   7454243   mediator of RNA polymerase II transcription subunit 33A 
 ppo-u.5   7457991   mediator of RNA polymerase II transcription subunit 33B 
 ppo-u.5   7458250   mediator of RNA polymerase II transcription subunit 33B-like 
 mtr-u.5   25499095   mediator of RNA polymerase II transcription subunit 33A 
 mtr-u.5   25488025   mediator of RNA polymerase II transcription subunit 33B 
 mtr-u.5   11440359   mediator of RNA polymerase II transcription subunit 33A 
 sly-u.5   101268578   mediator of RNA polymerase II transcription subunit 33A-like 
 sly-u.5   101260265   mediator of RNA polymerase II transcription subunit 33A 
 sly-u.5   101249759   mediator of RNA polymerase II transcription subunit 33A-like 
 osa-u.5   4342710   mediator of RNA polymerase II transcription subunit 33A 
 zma-u.5   100275134   uncharacterized LOC100275134 

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Top 50 coexpressed genes to 106434839 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106434839 (bna-r.1 coexpression data)

CoexMap"106434839"


bnaLOC106434839 | Entrez gene ID : 106434839    
Species bna ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit ghi bdi sbi cre
Paralog 1 2 2 2 3 3 3 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:2000762 [list] [network] regulation of phenylpropanoid metabolic process  (18 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (98 genes)  IEA  
GO MF
Protein XP_048612450.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  plas 3,  chlo 1,  cyto 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_048612450.1)
Subcellular
localization
TargetP
other 7  (predict for XP_048612450.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106434839

.
ath-u.5
for
REF4

.
ath-u.5
for
RFR1

.
gma-u.5
for
100812937

.
gma-u.5
for
100785972

.
vvi-u.5
for
100254459

.
vvi-u.5
for
100247741

.
ppo-u.5
for
7454243

.
ppo-u.5
for
7457991

.
ppo-u.5
for
7458250

.
mtr-u.5
for
25499095

.
mtr-u.5
for
25488025

.
mtr-u.5
for
11440359

.
sly-u.5
for
101268578

.
sly-u.5
for
101260265

.
sly-u.5
for
101249759

.
osa-u.5
for
4342710

.
zma-u.5
for
100275134

.


Ortholog ID: 3003
Species ath ath gma sly sly osa zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot sot cit cit bdi nta nta
Symbol RFR1 REF4 LOC100785972 LOC101268578 LOC101249759 LOC4342710 LOC100275134 LOC103866329 LOC103828726 LOC100247741 LOC100254459 LOC7454243 LOC7457991 LOC25488025 LOC25499095 LOC123188614 LOC123052769 LOC123426145 LOC107930378 LOC107936860 LOC106434839 LOC125585470 LOC8069095 LOC102599520 LOC102601086 LOC102625109 LOC102627163 LOC100828721 LOC142179350 LOC107760000
Function* REF4-related 1 reduced epidermal fluorescence 4 mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33A-like mediator of RNA polymerase II transcription subunit 33A-like mediator of RNA polymerase II transcription subunit 33A uncharacterized LOC100275134 mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A-like mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33B mediator of RNA polymerase II transcription subunit 33A mediator of RNA polymerase II transcription subunit 33A-like mediator of RNA polymerase II transcription subunit 33A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00564 Glycerophospholipid metabolism 3
sly00561 Glycerolipid metabolism 2
sly04070 Phosphatidylinositol signaling system 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 2
bra00051 Fructose and mannose metabolism 2
bra00052 Galactose metabolism 2
bra00500 Starch and sucrose metabolism 2
bra00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00940 Phenylpropanoid biosynthesis 7
ppo00670 One carbon pool by folate 7
ppo01230 Biosynthesis of amino acids 6
ppo01240 Biosynthesis of cofactors 6
ppo00941 Flavonoid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 2
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi00565 Ether lipid metabolism 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi00565 Ether lipid metabolism 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 6
cit00941 Flavonoid biosynthesis 2
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00030 Pentose phosphate pathway 2
nta00480 Glutathione metabolism 2
nta01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821938 819423 100785972 101268578 101249759 4342710 100275134 103866329 103828726 100247741 100254459 7454243 7457991 25488025 25499095 123188614 123052769 123426145 107930378 107936860 106434839 125585470 8069095 102599520 102601086 102625109 102627163 100828721 142179350 107760000
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