ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106435797	ADP-ribosylation factor 1-like 2
ath-u.5	ARFB1C	ADP-ribosylation factor B1C
ath-u.5	ARFB1B	ADP-ribosylation factor B1B
gma-u.5	100499903	uncharacterized LOC100499903
gma-u.5	100791271	ADP-ribosylation factor-like protein
gma-u.5	100816276	ADP-ribosylation factor-like
vvi-u.5	100254624	ADP-ribosylation factor-like
ppo-u.5	7494400	uncharacterized LOC7494400
ppo-u.5	112325621	uncharacterized LOC112325621
mtr-u.5	11440933	ADP-ribosylation factor
mtr-u.5	11437745	ADP-ribosylation factor
mtr-u.5	11423544	ADP-ribosylation factor
sly-u.5	101261925	uncharacterized LOC101261925
sly-u.5	101264106	uncharacterized LOC101264106
osa-u.5	107276116	ADP-ribosylation factor
osa-u.5	4349518	ADP-ribosylation factor
osa-u.5	4330422	uncharacterized LOC4330422
zma-u.5	100381426	uncharacterized LOC100381426
zma-u.5	100284295	ADP-ribosylation factor

Top 50 coexpressed genes to 106435797 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106435797 (bna-r.1 coexpression data)

CoexMap"106435797"

[Cytoscape]

Annotation

functional annotation

KEGG

bna04144 [list] [network] Endocytosis (511 genes)

GO BP

GO:0006886 [list] [network] intracellular protein transport	(894 genes)	IEA
GO:0016192 [list] [network] vesicle-mediated transport	(1457 genes)	IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(16489 genes)

IEA

GO MF

GO:0003924 [list] [network] GTPase activity	(685 genes)	IEA
GO:0005525 [list] [network] GTP binding	(777 genes)	IEA

Protein

XP_013732179.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 1, nucl 1, plas 1, nucl_plas 1

(predict for XP_013732179.1)

Subcellular
localization
TargetP

other 8, mito 3

(predict for XP_013732179.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106435797	ath-u.5 for ARFB1C	ath-u.5 for ARFB1B	gma-u.5 for 100499903	gma-u.5 for 100791271	gma-u.5 for 100816276	vvi-u.5 for 100254624	ppo-u.5 for 7494400	ppo-u.5 for 112325621	mtr-u.5 for 11440933	mtr-u.5 for 11437745	mtr-u.5 for 11423544	sly-u.5 for 101261925	sly-u.5 for 101264106	osa-u.5 for 107276116	osa-u.5 for 4349518	osa-u.5 for 4330422	zma-u.5 for 100381426	zma-u.5 for 100284295

Ortholog

Ortholog ID: 2553

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

ARFB1B

ARFB1C

Function^*

ADP-ribosylation factor 1-like 2

ADP-ribosylation factor

ADP-ribosylation factor B1B

ADP-ribosylation factor B1C

ADP-ribosylation factor

uncharacterized LOC102609009

ADP-ribosylation factor-like

uncharacterized LOC100499903

ADP-ribosylation factor-like

uncharacterized LOC7494400

uncharacterized LOC112325621

ADP-ribosylation factor

uncharacterized LOC101261925

uncharacterized LOC101264106

ADP-ribosylation factor 1-like 2

uncharacterized LOC107823941

uncharacterized LOC107778016

ADP-ribosylation factor

uncharacterized LOC100192068

ADP-ribosylation factor

ADP-ribosylation factor-like

ADP-ribosylation factor

ADP-ribosylation factor 1

ADP-ribosylation factor

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	4
bna00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	4
bna00270	Cysteine and methionine metabolism	3
bna00330	Arginine and proline metabolism	3
bna00480	Glutathione metabolism	3
bna00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2
ath04136	Autophagy - other	2
ath04382	Cornified envelope formation	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	4
ghi04120	Ubiquitin mediated proteolysis	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03083	Polycomb repressive complex	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04075	Plant hormone signal transduction	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	3
cit04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	7
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	8
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	4
ppo04144	Endocytosis	3
ppo00190	Oxidative phosphorylation	2
ppo04142	Lysosome	2
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot03050	Proteasome	3
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03060	Protein export	3
sot04141	Protein processing in endoplasmic reticulum	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00600	Sphingolipid metabolism	2
nta04142	Lysosome	2
nta03420	Nucleotide excision repair	2
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta03040	Spliceosome	2
nta03420	Nucleotide excision repair	2
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2
osa04130	SNARE interactions in vesicular transport	2
osa04145	Phagosome	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	4
zma04145	Phagosome	3
zma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	3
tae00250	Alanine, aspartate and glutamate metabolism	3
tae00760	Nicotinate and nicotinamide metabolism	3
tae01240	Biosynthesis of cofactors	3
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	6
tae00020	Citrate cycle (TCA cycle)	3
tae00270	Cysteine and methionine metabolism	3
tae00566	Sulfoquinovose metabolism	3
tae00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04130	SNARE interactions in vesicular transport	3
sbi00190	Oxidative phosphorylation	2
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi03013	Nucleocytoplasmic transport	3
sbi03015	mRNA surveillance pathway	3
sbi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04016	MAPK signaling pathway - plant	2
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	6
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04120	Ubiquitin mediated proteolysis	4
cre03083	Polycomb repressive complex	2
cre04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

125587545

106435950

103855133

103846274

831569

821079

121204742

107963505

102609009

100816276

100499903

100254624

7494400

112325621

11440933

11423544

101261925

101264106

102582856

102604392

107823941

107778016

4349518

107276116

100192068

123128086

123136033

123404546

123437081

8086279

8055086

100836668

100826050

5716652

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Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	3	1	2	3	2	3	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106435797 (bna-r.1 coexpression data)

Top 50 enrichment test to 106435797 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**