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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106365933   organelle RRM domain-containing protein 1, chloroplastic 
 bna-r.1   106437495   organelle RRM domain-containing protein 1, chloroplastic 
 bra-r.6   103857919   organelle RRM domain-containing protein 1, chloroplastic 
 ath-u.5   AT4G20030   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ghi-r.1   107921154   organelle RRM domain-containing protein 1, chloroplastic 
 ghi-r.1   107952434   organelle RRM domain-containing protein 1, chloroplastic 
 cit-r.1   102624831   organelle RRM domain-containing protein 1, chloroplastic 
 gma-u.5   100305971   uncharacterized LOC100305971 
 gma-u.5   100802603   glycine-rich RNA-binding protein 4, mitochondrial 
 vvi-u.5   100254274   organelle RRM domain-containing protein 6, chloroplastic 
 ppo-u.5   7471615   organelle RRM domain-containing protein 1, chloroplastic 
 mtr-u.5   11433950   multiple RNA-binding domain-containing protein 1 
 sly-u.5   101264588   small RNA-binding protein 11, chloroplastic 
 sot-r.1   102604708   cold-inducible RNA-binding protein 
 nta-r.1   107779718   small RNA-binding protein 11, chloroplastic 
 nta-r.1   107831044   small RNA-binding protein 11, chloroplastic 

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Top 50 coexpressed genes to 106365933 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106365933 (bna-r.1 coexpression data)

CoexMap"106440406"


bnaLOC106440406 | Entrez gene ID : 106440406    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta bdi osa tae zma cre sbi hvu
Paralog 2 1 1 2 1 2 1 1 1 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048026 [list] [network] positive regulation of mRNA splicing, via spliceosome  (18 genes)  IEA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (506 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013737515.2 [sequence] [blastp]
XP_048622535.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  mito 1,  plas 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for XP_013737515.2)
chlo 4,  nucl 2,  chlo_mito 2,  cyto_nucl 2  (predict for XP_048622535.1)
Subcellular
localization
TargetP
other 2  (predict for XP_013737515.2)
other 2  (predict for XP_048622535.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106365933
bna-r.1
for
106437495
bra-r.6
for
103857919
ath-u.5
for
AT4G20030
ghi-r.1
for
107921154
ghi-r.1
for
107952434
cit-r.1
for
102624831
gma-u.5
for
100305971
gma-u.5
for
100802603
vvi-u.5
for
100254274
ppo-u.5
for
7471615
mtr-u.5
for
11433950
sly-u.5
for
101264588
sot-r.1
for
102604708
nta-r.1
for
107779718
nta-r.1
for
107831044


Ortholog ID: 12667
Species bna bra ath ghi ghi cit gma gma vvi ppo mtr sly sot nta nta
Symbol LOC106437495 LOC103857919 AT4G20030 LOC107921154 LOC107952434 LOC102624831 LOC100305971 LOC100802603 LOC100254274 LOC7471615 LOC11433950 LOC101264588 LOC102604708 LOC107779718 LOC107831044
Function* organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic RNA-binding (RRM/RBD/RNP motifs) family protein organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic organelle RRM domain-containing protein 1, chloroplastic uncharacterized LOC100305971 glycine-rich RNA-binding protein 4, mitochondrial organelle RRM domain-containing protein 6, chloroplastic organelle RRM domain-containing protein 1, chloroplastic multiple RNA-binding domain-containing protein 1 small RNA-binding protein 11, chloroplastic cold-inducible RNA-binding protein small RNA-binding protein 11, chloroplastic small RNA-binding protein 11, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03250 Viral life cycle - HIV-1 2
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 8
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
gma04075 Plant hormone signal transduction 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 4
mtr04075 Plant hormone signal transduction 3
mtr04016 MAPK signaling pathway - plant 2
mtr04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly01200 Carbon metabolism 3
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 4
sot00710 Carbon fixation by Calvin cycle 3
sot01230 Biosynthesis of amino acids 3
sot00010 Glycolysis / Gluconeogenesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106437495 103857919 827748 107921154 107952434 102624831 100305971 100802603 100254274 7471615 11433950 101264588 102604708 107779718 107831044
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