ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106449128	peroxidase 39
bna-r.1	106449535	peroxidase 30
bna-r.1	106371075	peroxidase 3-like
bna-r.1	106371076	peroxidase 3
bra-r.6	103835007	peroxidase 30
bra-r.6	103833883	peroxidase 39
bra-r.6	103843616	peroxidase 3-like
ath-u.5	AT4G11290	Peroxidase superfamily protein
ath-u.5	AT3G21770	Peroxidase superfamily protein
ath-u.5	RCI3	Peroxidase superfamily protein
ghi-r.1	107887476	peroxidase 3
ghi-r.1	107918973	peroxidase 3
ghi-r.1	107893564	peroxidase 3
cit-r.1	102617251	peroxidase 30
gma-u.5	100784922	peroxidase 3-like
gma-u.5	100803114	peroxidase 3
gma-u.5	100785662	peroxidase 3
vvi-u.5	100255112	peroxidase 3
ppo-u.5	18106988	peroxidase 3
ppo-u.5	7491786	peroxidase 3
ppo-u.5	18106986	peroxidase 3
mtr-u.5	25492105	peroxidase 3
mtr-u.5	11416048	peroxidase 3
sly-u.5	101244376	peroxidase 3
sly-u.5	101244668	peroxidase 3-like
sly-u.5	101244958	peroxidase 3-like
sot-r.1	102603430	peroxidase 3-like
sot-r.1	102603099	peroxidase 3-like
sot-r.1	102590030	peroxidase 3-like
nta-r.1	107831776	peroxidase 3-like
nta-r.1	107831769	peroxidase 3-like
nta-r.1	107822686	peroxidase 3
osa-u.5	4341861	peroxidase 3
zma-u.5	100283382	peroxidase 39
tae-r.2	100415852	peroxidase 3
tae-r.2	123148981	peroxidase 3
tae-r.2	123166459	peroxidase 39
hvu-r.1	123408908	peroxidase 39-like
sbi-r.1	8083297	peroxidase 3
bdi-r.1	100826294	peroxidase 3

Top 50 coexpressed genes to 106449128 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106449128 (bna-r.1 coexpression data)

CoexMap"106449128"

[Cytoscape]

Annotation

functional annotation

KEGG

bna00940 [list] [network] Phenylpropanoid biosynthesis (421 genes)

GO BP

GO:0042744 [list] [network] hydrogen peroxide catabolic process	(295 genes)	IEA
GO:0006979 [list] [network] response to oxidative stress	(512 genes)	IEA

GO CC

GO:0009505 [list] [network] plant-type cell wall	(182 genes)	IEA
GO:0009506 [list] [network] plasmodesma	(322 genes)	IEA

GO MF

GO:0004601 [list] [network] peroxidase activity	(363 genes)	IEA
GO:0020037 [list] [network] heme binding	(1050 genes)	IEA

Protein

XP_013746391.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 3, cyto 2, extr 2, chlo 1, nucl 1, E.R. 1, golg 1

(predict for XP_013746391.1)

Subcellular
localization
TargetP

scret 9

(predict for XP_013746391.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106449128	bna-r.1 for 106449535	bna-r.1 for 106371075	bna-r.1 for 106371076	bra-r.6 for 103835007	bra-r.6 for 103833883	bra-r.6 for 103843616	ath-u.5 for AT4G11290	ath-u.5 for AT3G21770	ath-u.5 for RCI3	ghi-r.1 for 107887476	ghi-r.1 for 107918973	ghi-r.1 for 107893564	cit-r.1 for 102617251	gma-u.5 for 100784922	gma-u.5 for 100803114	gma-u.5 for 100785662	vvi-u.5 for 100255112	ppo-u.5 for 18106988	ppo-u.5 for 7491786	ppo-u.5 for 18106986	mtr-u.5 for 25492105	mtr-u.5 for 11416048	sly-u.5 for 101244376	sly-u.5 for 101244668	sly-u.5 for 101244958	sot-r.1 for 102603430	sot-r.1 for 102603099	sot-r.1 for 102590030	nta-r.1 for 107831776	nta-r.1 for 107831769	nta-r.1 for 107822686	osa-u.5 for 4341861	zma-u.5 for 100283382	tae-r.2 for 100415852	tae-r.2 for 123148981	tae-r.2 for 123166459	hvu-r.1 for 123408908	sbi-r.1 for 8083297	bdi-r.1 for 100826294

Ortholog

Ortholog ID: 1175

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

RCI3

Function^*

peroxidase 3-like

peroxidase 3

peroxidase 39

peroxidase 3-like

peroxidase 3

Peroxidase superfamily protein

peroxidase 3

peroxidase 30

peroxidase 3-like

peroxidase

peroxidase 3

peroxidase 3-like

peroxidase 3

peroxidase 39

peroxidase 3

peroxidase 39

peroxidase 3

peroxidase 39-like

peroxidase 3

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00460	Cyanoamino acid metabolism	2
bra00500	Starch and sucrose metabolism	2
bra00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	2
bra00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	8
ghi00531	Glycosaminoglycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	7
ghi00999	Biosynthesis of various plant secondary metabolites	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	8
ghi00531	Glycosaminoglycan degradation	2
ghi00999	Biosynthesis of various plant secondary metabolites	2
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	5
gma00591	Linoleic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	6
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	2
mtr00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	6
sly00561	Glycerolipid metabolism	2
sly00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3
sot00520	Amino sugar and nucleotide sugar metabolism	3
sot01250	Biosynthesis of nucleotide sugars	3
sot00040	Pentose and glucuronate interconversions	2
sot00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	5
sot04016	MAPK signaling pathway - plant	2
sot02010	ABC transporters	2
sot04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	7
sot00941	Flavonoid biosynthesis	2
sot00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	8
nta00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	3
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	9
tae00940	Phenylpropanoid biosynthesis	4
tae03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	4
tae04075	Plant hormone signal transduction	4
tae04016	MAPK signaling pathway - plant	3
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	4

Expression

Expression pattern

Entrez Gene ID^*

106371075

106371076

106420000

103833883

103843616

103844153

826731

821731

837028

107893564

107893565

107893566

102617251

100784922

547872

547871

100255112

18106988

7491786

18106986

25492105

11416048

101244958

101246070

101249936

102603099

102590030

102581076

107766025

107797534

107820554

4341861

100283382

100415852

123148979

123169395

123408908

8083297

100826294

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	1	3	1	3	2	3	3	3	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106449128 (bna-r.1 coexpression data)

Top 50 enrichment test to 106449128 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**