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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103863050   uncharacterized LOC103863050 
 ath-u.5   AT3G02370   tRNA-splicing endonuclease subunit 
 ath-u.5   AT3G57360   tRNA-splicing endonuclease subunit 
 ghi-r.1   121213987   uncharacterized LOC121213987 
 ghi-r.1   107922143   uncharacterized LOC107922143 
 cit-r.1   102630019   uncharacterized LOC102630019 
 gma-u.5   100799269   uncharacterized LOC100799269 
 vvi-u.5   100257347   uncharacterized LOC100257347 
 ppo-u.5   18106521   uncharacterized LOC18106521 
 mtr-u.5   25501896   uncharacterized LOC25501896 
 sly-u.5   101263683   uncharacterized LOC101263683 
 sly-u.5   101248925   probable tRNA-splicing endonuclease subunit sen54 
 sot-r.1   102583437   tRNA-splicing endonuclease subunit Sen54-like 
 sot-r.1   102592019   tRNA-splicing endonuclease subunit Sen54 
 nta-r.1   107762064   putative tRNA-splicing endonuclease subunit sen54 
 nta-r.1   107765108   putative tRNA-splicing endonuclease subunit sen54 
 nta-r.1   107785058   putative tRNA-splicing endonuclease subunit sen54 
 osa-u.5   4347501   uncharacterized LOC4347501 
 zma-u.5   100193120   uncharacterized LOC100193120 
 tae-r.2   123104289   uncharacterized LOC123104289 
 tae-r.2   123104287   uncharacterized LOC123104287 
 tae-r.2   123112542   uncharacterized LOC123112542 
 hvu-r.1   123399708   uncharacterized LOC123399708 
 hvu-r.1   123399712   uncharacterized LOC123399712 
 sbi-r.1   8084352   tRNA-splicing endonuclease subunit Sen54 
 bdi-r.1   100839648   uncharacterized LOC100839648 
 cre-r.1   CHLRE_03g204750v5   uncharacterized protein 

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Top 50 coexpressed genes to 103863050 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103863050 (bra-r.6 coexpression data)

CoexMap"106449144"


bnaLOC106449144 | Entrez gene ID : 106449144    
Species bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bna
Paralog 1 2 2 1 1 1 1 1 2 2 3 1 1 3 2 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000379 [list] [network] tRNA-type intron splice site recognition and cleavage  (10 genes)  IEA  
GO CC
GO:0000214 [list] [network] tRNA-intron endonuclease complex  (10 genes)  IEA  
GO MF
Protein XP_013746401.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  chlo 1,  extr 1,  cysk 1,  chlo_mito 1  (predict for XP_013746401.1)
Subcellular
localization
TargetP
other 9  (predict for XP_013746401.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103863050
ath-u.5
for
AT3G02370
ath-u.5
for
AT3G57360
ghi-r.1
for
121213987
ghi-r.1
for
107922143
cit-r.1
for
102630019
gma-u.5
for
100799269
vvi-u.5
for
100257347
ppo-u.5
for
18106521
mtr-u.5
for
25501896
sly-u.5
for
101263683
sly-u.5
for
101248925
sot-r.1
for
102583437
sot-r.1
for
102592019
nta-r.1
for
107762064
nta-r.1
for
107765108
nta-r.1
for
107785058
osa-u.5
for
4347501
zma-u.5
for
100193120
tae-r.2
for
123104289
tae-r.2
for
123104287
tae-r.2
for
123112542
hvu-r.1
for
123399708
hvu-r.1
for
123399712
sbi-r.1
for
8084352
bdi-r.1
for
100839648
cre-r.1
for
CHLRE_03g204750v5


Ortholog ID: 4726
Species bra ath ath ghi ghi cit gma vvi ppo mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC103863050 AT3G02370 AT3G57360 LOC121213987 LOC107922143 LOC102630019 LOC100799269 LOC100257347 LOC18106521 LOC25501896 LOC101263683 LOC101248925 LOC102583437 LOC102592019 LOC107785058 LOC107819777 LOC107801623 LOC4347501 LOC100193120 LOC123104289 LOC123104287 LOC123112542 LOC123399708 LOC123399712 LOC8084352 LOC100839648 CHLRE_03g204750v5
Function* uncharacterized LOC103863050 tRNA-splicing endonuclease subunit tRNA-splicing endonuclease subunit uncharacterized LOC121213987 uncharacterized LOC107922143 uncharacterized LOC102630019 uncharacterized LOC100799269 uncharacterized LOC100257347 uncharacterized LOC18106521 uncharacterized LOC25501896 uncharacterized LOC101263683 probable tRNA-splicing endonuclease subunit sen54 tRNA-splicing endonuclease subunit Sen54-like tRNA-splicing endonuclease subunit Sen54 putative tRNA-splicing endonuclease subunit sen54 putative tRNA-splicing endonuclease subunit sen54 putative tRNA-splicing endonuclease subunit sen54 uncharacterized LOC4347501 uncharacterized LOC100193120 uncharacterized LOC123104289 uncharacterized LOC123104287 uncharacterized LOC123112542 uncharacterized LOC123399708 uncharacterized LOC123399712 tRNA-splicing endonuclease subunit Sen54 uncharacterized LOC100839648 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00020 Citrate cycle (TCA cycle) 2
ghi00310 Lysine degradation 2
ghi00380 Tryptophan metabolism 2
ghi00785 Lipoic acid metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00020 Citrate cycle (TCA cycle) 2
ghi00310 Lysine degradation 2
ghi00380 Tryptophan metabolism 2
ghi00785 Lipoic acid metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 4
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo03040 Spliceosome 2
ppo00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103863050 821119 824903 121213987 107922143 102630019 100799269 100257347 18106521 25501896 101263683 101248925 102583437 102592019 107785058 107819777 107801623 4347501 100193120 123104289 123104287 123112542 123399708 123399712 8084352 100839648 5718863
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