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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106451056   protein RETICULATA, chloroplastic-like 
 bna-r.1   125575579   protein RETICULATA, chloroplastic-like 
 bna-r.1   106438182   protein RETICULATA, chloroplastic 
 bna-r.1   106427760   protein RETICULATA, chloroplastic 
 bra-r.6   103845531   protein RETICULATA-RELATED 1, chloroplastic 
 bra-r.6   103867158   protein RETICULATA, chloroplastic 
 bra-r.6   103857740   protein RETICULATA, chloroplastic 
 ath-u.5   LCD1   reticulata-like protein, putative (DUF3411) 
 ath-u.5   RER1   reticulata-related 1 
 ghi-r.1   107891638   protein RETICULATA-RELATED 1, chloroplastic 
 ghi-r.1   107889042   protein RETICULATA-RELATED 1, chloroplastic 
 ghi-r.1   107940906   protein RETICULATA, chloroplastic 
 cit-r.1   102616798   protein RETICULATA, chloroplastic 
 cit-r.1   102612997   protein RETICULATA-RELATED 1, chloroplastic-like 
 gma-u.5   100799853   protein RETICULATA-RELATED 1, chloroplastic 
 gma-u.5   100783806   protein RETICULATA, chloroplastic 
 gma-u.5   100780872   protein RETICULATA, chloroplastic 
 vvi-u.5   100854755   protein RETICULATA-RELATED 1, chloroplastic 
 vvi-u.5   100264910   protein RETICULATA, chloroplastic 
 ppo-u.5   7486529   protein RETICULATA, chloroplastic 
 ppo-u.5   7474926   protein RETICULATA-RELATED 1, chloroplastic 
 mtr-u.5   25498625   protein RETICULATA, chloroplastic 
 mtr-u.5   25487489   protein RETICULATA-RELATED 1, chloroplastic 
 sly-u.5   101252515   protein RETICULATA, chloroplastic 
 sly-u.5   101244740   reticulata-related protein 
 sot-r.1   102591402   protein RETICULATA, chloroplastic 
 sot-r.1   102588147   protein RETICULATA-RELATED 1, chloroplastic 
 nta-r.1   107821219   protein RETICULATA, chloroplastic 
 nta-r.1   107763136   protein RETICULATA-RELATED 1, chloroplastic-like 
 nta-r.1   107762751   protein RETICULATA, chloroplastic-like 
 osa-u.5   4336440   protein RETICULATA-RELATED 1, chloroplastic 
 osa-u.5   4342806   protein RETICULATA-RELATED 1, chloroplastic 
 osa-u.5   4350400   uncharacterized LOC4350400 
 zma-u.5   100277077   Protein RETICULATA chloroplastic 
 zma-u.5   103648205   Protein RETICULATA chloroplastic 
 tae-r.2   123053958   protein RETICULATA, chloroplastic 
 tae-r.2   123044909   protein RETICULATA, chloroplastic 
 tae-r.2   123189855   protein RETICULATA-RELATED 1, chloroplastic 
 hvu-r.1   123425992   protein RETICULATA, chloroplastic-like 
 sbi-r.1   8069135   protein RETICULATA, chloroplastic 
 bdi-r.1   100845721   protein RETICULATA, chloroplastic 
 cre-r.1   CHLRE_02g141100v5   uncharacterized protein 

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Top 50 coexpressed genes to 106451056 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106451056 (bna-r.1 coexpression data)

CoexMap"106451056"


bnaLOC106451056 | Entrez gene ID : 106451056    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 3 2 3 2 2 2 2 2 3 3 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0099402 [list] [network] plant organ development  (274 genes)  IEA  
GO CC
GO:0009706 [list] [network] chloroplast inner membrane  (48 genes)  IEA  
GO MF
Protein XP_013748366.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  E.R. 2,  mito 1,  cyto_E.R. 1  (predict for XP_013748366.2)
Subcellular
localization
TargetP
chlo 7  (predict for XP_013748366.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106451056
bna-r.1
for
125575579
bna-r.1
for
106438182
bna-r.1
for
106427760
bra-r.6
for
103845531
bra-r.6
for
103867158
bra-r.6
for
103857740
ath-u.5
for
LCD1
ath-u.5
for
RER1
ghi-r.1
for
107891638
ghi-r.1
for
107889042
ghi-r.1
for
107940906
cit-r.1
for
102616798
cit-r.1
for
102612997
gma-u.5
for
100799853
gma-u.5
for
100783806
gma-u.5
for
100780872
vvi-u.5
for
100854755
vvi-u.5
for
100264910
ppo-u.5
for
7486529
ppo-u.5
for
7474926
mtr-u.5
for
25498625
mtr-u.5
for
25487489
sly-u.5
for
101252515
sly-u.5
for
101244740
sot-r.1
for
102591402
sot-r.1
for
102588147
nta-r.1
for
107821219
nta-r.1
for
107763136
nta-r.1
for
107762751
osa-u.5
for
4336440
osa-u.5
for
4342806
osa-u.5
for
4350400
zma-u.5
for
100277077
zma-u.5
for
103648205
tae-r.2
for
123053958
tae-r.2
for
123044909
tae-r.2
for
123189855
hvu-r.1
for
123425992
sbi-r.1
for
8069135
bdi-r.1
for
100845721
cre-r.1
for
CHLRE_02g141100v5


Ortholog ID: 3088
Species bna bna bna bra bra bra ath ath ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC106451056 LOC106438182 LOC106371637 LOC103867158 LOC103857740 LOC103856532 LCD1 RER1 LOC107889042 LOC107940906 LOC102616798 LOC102612997 LOC100799853 LOC100780872 LOC100808085 LOC100854755 LOC100264910 LOC7486529 LOC7474926 LOC25498625 LOC25487489 LOC101252515 LOC101244740 LOC102591402 LOC102588147 LOC107821219 LOC107762751 LOC107831559 LOC4336440 LOC4342806 LOC4350400 LOC100277077 LOC103648205 LOC123044909 LOC123189855 LOC123188547 LOC123425992 LOC8069135 LOC100845721 CHLRE_02g141100v5
Function* protein RETICULATA, chloroplastic-like protein RETICULATA, chloroplastic protein RETICULATA-RELATED 1, chloroplastic-like protein RETICULATA, chloroplastic protein RETICULATA, chloroplastic protein RETICULATA-RELATED 1, chloroplastic reticulata-like protein, putative (DUF3411) reticulata-related 1 protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA, chloroplastic protein RETICULATA, chloroplastic protein RETICULATA-RELATED 1, chloroplastic-like protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA, chloroplastic protein RETICULATA, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA, chloroplastic reticulata-related protein protein RETICULATA, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA, chloroplastic protein RETICULATA, chloroplastic-like protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic uncharacterized LOC4350400 Protein RETICULATA chloroplastic Protein RETICULATA chloroplastic protein RETICULATA, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA, chloroplastic protein RETICULATA, chloroplastic-like protein RETICULATA, chloroplastic protein RETICULATA, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra00250 Alanine, aspartate and glutamate metabolism 3
bra00230 Purine metabolism 2
bra00220 Arginine biosynthesis 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath01230 Biosynthesis of amino acids 5
ath00230 Purine metabolism 3
ath01240 Biosynthesis of cofactors 2
ath00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 8
ghi00280 Valine, leucine and isoleucine degradation 4
ghi00410 beta-Alanine metabolism 4
ghi00640 Propanoate metabolism 4
ghi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 3
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00500 Starch and sucrose metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04145 Phagosome 2
gma04517 IgSF CAM signaling 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00020 Citrate cycle (TCA cycle) 4
vvi01200 Carbon metabolism 4
vvi00010 Glycolysis / Gluconeogenesis 3
vvi00620 Pyruvate metabolism 3
vvi00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 4
ppo01200 Carbon metabolism 3
ppo04146 Peroxisome 3
ppo00071 Fatty acid degradation 2
ppo00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr01240 Biosynthesis of cofactors 2
mtr00010 Glycolysis / Gluconeogenesis 2
mtr01200 Carbon metabolism 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00260 Glycine, serine and threonine metabolism 2
sly00750 Vitamin B6 metabolism 2
sly01230 Biosynthesis of amino acids 2
sly00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 5
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 6
sot00190 Oxidative phosphorylation 3
sot00300 Lysine biosynthesis 2
sot00470 D-Amino acid metabolism 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta00030 Pentose phosphate pathway 2
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta00030 Pentose phosphate pathway 2
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 3
nta00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
osa03008 Ribosome biogenesis in eukaryotes 4
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 4
osa03013 Nucleocytoplasmic transport 3
osa00220 Arginine biosynthesis 3
osa01210 2-Oxocarboxylic acid metabolism 3
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 3
tae00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00061 Fatty acid biosynthesis 6
tae00780 Biotin metabolism 6
tae01212 Fatty acid metabolism 6
tae01240 Biosynthesis of cofactors 6
tae00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 3
hvu03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03013 Nucleocytoplasmic transport 2
bdi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00010 Glycolysis / Gluconeogenesis 4
cre01200 Carbon metabolism 4
cre00620 Pyruvate metabolism 3
cre00020 Citrate cycle (TCA cycle) 2
cre00785 Lipoic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106451056 106438182 106371637 103867158 103857740 103856532 818362 832342 107889042 107940906 102616798 102612997 100799853 100780872 100808085 100854755 100264910 7486529 7474926 25498625 25487489 101252515 101244740 102591402 102588147 107821219 107762751 107831559 4336440 4342806 4350400 100277077 103648205 123044909 123189855 123188547 123425992 8069135 100845721 5720426
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