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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106452946   small nuclear ribonucleoprotein SmD1a 
 ath-u.5   AT3G07590   Small nuclear ribonucleoprotein family protein 
 ath-u.5   AT4G02840   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100778485   small nuclear ribonucleoprotein Sm D1-like 
 gma-u.5   100793721   small nuclear ribonucleoprotein SmD1a 
 gma-u.5   100819089   small nuclear ribonucleoprotein Sm D1-like 
 vvi-u.5   100258386   small nuclear ribonucleoprotein SmD1a 
 vvi-u.5   100256258   small nuclear ribonucleoprotein SmD1a 
 ppo-u.5   7480704   small nuclear ribonucleoprotein SmD1a 
 mtr-u.5   25499104   small nuclear ribonucleoprotein SmD1b 
 mtr-u.5   11420807   small nuclear ribonucleoprotein SmD1a 
 sly-u.5   101251485   small nuclear ribonucleoprotein SmD1b 
 sly-u.5   101248611   small nuclear ribonucleoprotein SmD1b 
 osa-u.5   4329810   small nuclear ribonucleoprotein SmD1a 
 osa-u.5   4336118   small nuclear ribonucleoprotein SmD1a 
 zma-u.5   100286216   small nuclear ribonucleoprotein Sm D1 
 zma-u.5   100281963   small nuclear ribonucleoprotein Sm D1 
 zma-u.5   100284787   uncharacterized LOC100284787 

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Top 50 coexpressed genes to 106452946 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106452946 (bna-r.1 coexpression data)

CoexMap"106452946"


bnaLOC106452946 | Entrez gene ID : 106452946    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 2 3 2 1 2 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (90 genes)  IEA  
GO:0006396 [list] [network] RNA processing  (1786 genes)  IEA  
GO CC
GO:0034715 [list] [network] pICln-Sm protein complex  (16 genes)  IEA  
GO:0000243 [list] [network] commitment complex  (31 genes)  IEA  
GO:0034719 [list] [network] SMN-Sm protein complex  (31 genes)  IEA  
GO:0005687 [list] [network] U4 snRNP  (34 genes)  IEA  
GO:0005682 [list] [network] U5 snRNP  (56 genes)  IEA  
GO:0005689 [list] [network] U12-type spliceosomal complex  (61 genes)  IEA  
GO:0005686 [list] [network] U2 snRNP  (88 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (102 genes)  IEA  
GO:0097526 [list] [network] spliceosomal tri-snRNP complex  (117 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (154 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013750594.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1,  mito 1,  extr 1,  chlo_mito 1  (predict for XP_013750594.1)
Subcellular
localization
TargetP
other 6  (predict for XP_013750594.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106452946

.
ath-u.5
for
AT3G07590

.
ath-u.5
for
AT4G02840

.
gma-u.5
for
100778485

.
gma-u.5
for
100793721

.
gma-u.5
for
100819089

.
vvi-u.5
for
100258386

.
vvi-u.5
for
100256258

.
ppo-u.5
for
7480704

.
mtr-u.5
for
25499104

.
mtr-u.5
for
11420807

.
sly-u.5
for
101251485

.
sly-u.5
for
101248611

.
osa-u.5
for
4329810

.
osa-u.5
for
4336118

.
zma-u.5
for
100286216

.
zma-u.5
for
100281963

.
zma-u.5
for
100284787

.


Ortholog ID: 2465
Species ath ath gma gma sly sly osa osa zma zma bra vvi vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT4G02840 AT3G07590 LOC100793721 LOC100819089 LOC101248611 LOC101251485 LOC4329810 LOC4336118 LOC100286216 LOC100281963 LOC103859234 LOC100256258 LOC100258386 LOC7480704 LOC11420807 LOC25499104 LOC123127567 LOC123053594 LOC123405972 LOC123426973 LOC107912482 LOC107949107 LOC106401558 CHLRE_16g665400v5 LOC110436352 LOC8070571 LOC102599286 LOC102593694 LOC102621015 LOC100834268 LOC100846329 LOC107782700 LOC107776869
Function* Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein Sm D1-like small nuclear ribonucleoprotein SmD1b small nuclear ribonucleoprotein SmD1b small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein Sm D1 small nuclear ribonucleoprotein Sm D1 small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1b small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a-like small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a uncharacterized protein small nuclear ribonucleoprotein Sm D1-like small nuclear ribonucleoprotein Sm D1 small nuclear ribonucleoprotein Sm D1 small nuclear ribonucleoprotein Sm D1-like small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1a small nuclear ribonucleoprotein SmD1b-like small nuclear ribonucleoprotein SmD1b
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03010 Ribosome 7
ath03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03010 Ribosome 3
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 10
osa03040 Spliceosome 3
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03018 RNA degradation 3
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03420 Nucleotide excision repair 4
mtr03020 RNA polymerase 3
mtr03040 Spliceosome 3
mtr03010 Ribosome 3
mtr01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr03040 Spliceosome 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03040 Spliceosome 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 18
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu03040 Spliceosome 3
hvu03013 Nucleocytoplasmic transport 2
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
bna00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 10
cre03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi03040 Spliceosome 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 14
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 12
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 10
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 5
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03010 Ribosome 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 10
nta03030 DNA replication 3
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828163 819950 100793721 100819089 101248611 101251485 4329810 4336118 100286216 100281963 103859234 100256258 100258386 7480704 11420807 25499104 123127567 123053594 123405972 123426973 107912482 107949107 106401558 5726987 110436352 8070571 102599286 102593694 102621015 100834268 100846329 107782700 107776869
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