ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4330680	metalloendoproteinase 2-MMP
tae-r.2	123149168	metalloendoproteinase 2-MMP
tae-r.2	123165027	metalloendoproteinase 2-MMP-like
tae-r.2	123157482	metalloendoproteinase 2-MMP
hvu-r.1	123413262	metalloendoproteinase 2-MMP-like
hvu-r.1	123449985	metalloendoproteinase 1-MMP-like
hvu-r.1	123439670	metalloendoproteinase 1-MMP-like
bdi-r.1	100844905	metalloendoproteinase 1-MMP
bdi-r.1	100840393	metalloendoproteinase 4-MMP
bdi-r.1	100826984	metalloendoproteinase 3-MMP
zma-u.5	100274259	Metalloendoproteinase 5-MMP
zma-u.5	100285384	metalloendoproteinase 1
zma-u.5	103637649	metalloendoproteinase 1-MMP
sbi-r.1	8061483	metalloendoproteinase 2-MMP
sbi-r.1	8068601	metalloendoproteinase 2-MMP
sbi-r.1	8058083	metalloendoproteinase 1-MMP
ath-u.5	MMP	matrix metalloproteinase
gma-u.5	100802398	metalloendoproteinase 5-MMP
gma-u.5	100803218	metalloendoproteinase 5-MMP
sly-u.5	MMP1	matrix metalloproteinases protein 3
sly-u.5	101251805	metalloendoproteinase 4-MMP
bra-r.6	103840707	metalloendoproteinase 3-MMP
bra-r.6	103830895	metalloendoproteinase 2-MMP
bra-r.6	103838570	metalloendoproteinase 5-MMP
mtr-u.5	11406532	metalloendoproteinase 2-MMP
mtr-u.5	25494612	metalloendoproteinase 5-MMP
mtr-u.5	11409998	metalloendoproteinase 2-MMP
ghi-r.1	107910864	metalloendoproteinase 1
ghi-r.1	107922924	metalloendoproteinase 4-MMP
bna-r.1	106376598	metalloendoproteinase 5-MMP
bna-r.1	106347235	metalloendoproteinase 2-MMP
sot-r.1	102591586	metalloendoproteinase 4-MMP
sot-r.1	102592086	metalloendoproteinase 3-MMP-like
cit-r.1	102627001	metalloendoproteinase 3-MMP-like
nta-r.1	107782587	metalloendoproteinase 4-MMP-like
nta-r.1	107776901	metalloendoproteinase 1-MMP-like
cre-r.1	CHLRE_14g609202v5	uncharacterized protein

Top 50 coexpressed genes to 4330680 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4330680 (osa-u.5 coexpression data)

CoexMap"107276648"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0030574 [list] [network] collagen catabolic process	(6 genes)	IEA
GO:0030198 [list] [network] extracellular matrix organization	(17 genes)	IEA
GO:0006508 [list] [network] proteolysis	(888 genes)	IEA

GO CC

GO:0031012 [list] [network] extracellular matrix

(6 genes)

IEA

GO MF

GO:0004222 [list] [network] metalloendopeptidase activity	(54 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(840 genes)	IEA

Protein

XP_015613978.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, mito 1

(predict for XP_015613978.1)

Subcellular
localization
TargetP

mito 6

(predict for XP_015613978.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4330680	tae-r.2 for 123149168	tae-r.2 for 123165027	tae-r.2 for 123157482	hvu-r.1 for 123413262	hvu-r.1 for 123449985	hvu-r.1 for 123439670	bdi-r.1 for 100844905	bdi-r.1 for 100840393	bdi-r.1 for 100826984	zma-u.5 for 100274259	zma-u.5 for 100285384	zma-u.5 for 103637649	sbi-r.1 for 8061483	sbi-r.1 for 8068601	sbi-r.1 for 8058083	ath-u.5 for MMP	gma-u.5 for 100802398	gma-u.5 for 100803218	sly-u.5 for MMP1	sly-u.5 for 101251805	bra-r.6 for 103840707	bra-r.6 for 103830895	bra-r.6 for 103838570	mtr-u.5 for 11406532	mtr-u.5 for 25494612	mtr-u.5 for 11409998	ghi-r.1 for 107910864	ghi-r.1 for 107922924	bna-r.1 for 106376598	bna-r.1 for 106347235	sot-r.1 for 102591586	sot-r.1 for 102592086	cit-r.1 for 102627001	nta-r.1 for 107782587	nta-r.1 for 107776901	cre-r.1 for CHLRE_14g609202v5

Ortholog

Ortholog ID: 384

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

ppo

mtr

ghi

sot

cit

nta

cre

Symbol

MMP

SMEP1

MMP1

MMP2

Function^*

metalloendoproteinase 2-MMP

metalloendoproteinase 4-MMP

metalloendoproteinase 1-MMP-like

metalloendoproteinase 2-MMP-like

metalloendoproteinase 1-MMP-like

metalloendoproteinase 3-MMP-like

metalloendoproteinase 1-MMP

metalloendoproteinase 3-MMP

Metalloendoproteinase 5-MMP

metalloendoproteinase 1

metalloendoproteinase 1-MMP

metalloendoproteinase 2-MMP

metalloendoproteinase 1-MMP

matrix metalloproteinase

Matrixin family protein

metalloendoproteinase 2-MMP

metalloproteinase

matrix metalloproteinases protein 3

matrix metalloproteinase 2

metalloendoproteinase 2-MMP

metalloendoproteinase 5-MMP

metalloendoproteinase 2-MMP

metalloendoproteinase 1

metalloendoproteinase 2-MMP

metalloendoproteinase 4-MMP

metalloendoproteinase 1

metalloendoproteinase 2-MMP-like

metalloendoproteinase 5-MMP

metalloendoproteinase 4-MMP

metalloendoproteinase 3-MMP-like

metalloendoproteinase 3-MMP

metalloendoproteinase 1-MMP-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00908	Zeatin biosynthesis	4
bdi04075	Plant hormone signal transduction	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00561	Glycerolipid metabolism	2
ath00564	Glycerophospholipid metabolism	2
ath02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00561	Glycerolipid metabolism	3
bra00564	Glycerophospholipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	5
ghi04016	MAPK signaling pathway - plant	4
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2
sot00360	Phenylalanine metabolism	2
sot00940	Phenylpropanoid biosynthesis	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	3
cit04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	2
nta04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

9270797

123106099

123099138

123052586

123413262

123439670

123402518

100844905

100826984

100828046

100274259

100285384

103637649

8061483

8068601

8058083

843353

839026

842291

100782143

547880

101055590

101260125

103830895

103838570

103831562

18104342

11409998

11442232

25494610

107945266

107915776

107912216

102591586

102592086

102616119

107776901

107760134

5726898

The preparation time of this page was 1.0 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	mtr	ghi	bna	sot	cit	nta	cre	ppo	vvi
Paralog	1	3	3	3	3	3	1	2	2	3	3	2	2	2	1	2	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4330680 (osa-u.5 coexpression data)

Top 50 enrichment test to 4330680 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**