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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107768513   histone deacetylase 5-like 
 nta-r.1   107823687   histone deacetylase 5 
 nta-r.1   107809119   histone deacetylase 5 
 sly-u.5   101256079   histone deacetylase 5 
 sot-r.1   102592093   histone deacetylase 5 
 ath-u.5   HDA05   histone deacetylase 5 
 ath-u.5   HDA18   histone deacetylase of the RPD3/HDA1 superfamily 18 
 gma-u.5   HDA6   histone deacetylase 
 gma-u.5   HDA15   histone deacetylase 
 bra-r.6   103854929   histone deacetylase 5-like 
 bra-r.6   103837366   histone deacetylase 5 
 bra-r.6   103860568   histone deacetylase 5 
 vvi-u.5   100250074   histone deacetylase 5 
 ppo-u.5   7493532   histone deacetylase 5 
 mtr-u.5   25493882   histone deacetylase 5 
 ghi-r.1   107949789   histone deacetylase 5 
 ghi-r.1   107887099   histone deacetylase 5 
 bna-r.1   106439946   histone deacetylase 5 
 cit-r.1   102622666   histone deacetylase 5 
 osa-u.5   4343829   histone deacetylase 5 
 zma-u.5   541883   RPD3 histone deacetylase homolog 
 tae-r.2   123044286   histone deacetylase 5 
 tae-r.2   123052167   histone deacetylase 5 
 tae-r.2   123138381   histone deacetylase 5 
 hvu-r.1   123425379   histone deacetylase 5 
 hvu-r.1   123443565   histone deacetylase 5-like 
 sbi-r.1   8060653   histone deacetylase 5 
 bdi-r.1   100826085   histone deacetylase 5 
 cre-r.1   CHLRE_11g467785v5   uncharacterized protein 
 cre-r.1   CHLRE_11g469600v5   uncharacterized protein 

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Top 50 coexpressed genes to 107768513 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107768513 (nta-r.1 coexpression data)

CoexMap"107768513"


ntaLOC107768513 | Entrez gene ID : 107768513      
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 1 1 2 2 3 1 1 1 2 1 1 1 1 3 2 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0040029 [list] [network] epigenetic regulation of gene expression  (96 genes)  IEA  
GO CC
GO:0000118 [list] [network] histone deacetylase complex  (52 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (8458 genes)  IEA  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (24 genes)  IEA  
Protein XP_016443129.1 [sequence] [blastp]
XP_016443130.1 [sequence] [blastp]
XP_016443131.1 [sequence] [blastp]
XP_075097481.1 [sequence] [blastp]
XP_075097482.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  cysk 4  (predict for XP_016443129.1)
cyto 5,  cysk 4  (predict for XP_016443130.1)
cyto 5,  pero 1,  cysk 1,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_016443131.1)
cyto 5,  cysk 4  (predict for XP_075097481.1)
cyto 5,  cysk 4  (predict for XP_075097482.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016443129.1)
other 9  (predict for XP_016443130.1)
other 8  (predict for XP_016443131.1)
other 9  (predict for XP_075097481.1)
other 9  (predict for XP_075097482.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107768513
nta-r.1
for
107823687
nta-r.1
for
107809119
sly-u.5
for
101256079
sot-r.1
for
102592093
ath-u.5
for
HDA05
ath-u.5
for
HDA18
gma-u.5
for
HDA6
gma-u.5
for
HDA15
bra-r.6
for
103854929
bra-r.6
for
103837366
bra-r.6
for
103860568
vvi-u.5
for
100250074
ppo-u.5
for
7493532
mtr-u.5
for
25493882
ghi-r.1
for
107949789
ghi-r.1
for
107887099
bna-r.1
for
106439946
cit-r.1
for
102622666
osa-u.5
for
4343829
zma-u.5
for
541883
tae-r.2
for
123044286
tae-r.2
for
123052167
tae-r.2
for
123138381
hvu-r.1
for
123425379
hvu-r.1
for
123443565
sbi-r.1
for
8060653
bdi-r.1
for
100826085
cre-r.1
for
CHLRE_11g467785v5
cre-r.1
for
CHLRE_11g469600v5


Ortholog ID: 5000
Species nta nta nta sly sot ath ath gma gma bra bra vvi ppo mtr ghi ghi bna cit osa zma tae tae tae hvu hvu sbi bdi cre cre
Symbol LOC107768513 LOC107823687 LOC107809119 LOC101256079 LOC102592093 HDA05 HDA18 HDA6 HDA15 LOC103854929 LOC103860568 LOC100250074 LOC7493532 LOC25493882 LOC107949789 LOC107887099 LOC106439946 LOC102622666 LOC4343829 LOC541883 LOC123052167 LOC123138381 LOC123188026 LOC123425379 LOC123443565 LOC8060653 LOC100826085 CHLRE_11g467785v5 CHLRE_11g469600v5
Function* histone deacetylase 5-like histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase of the RPD3/HDA1 superfamily 18 histone deacetylase histone deacetylase histone deacetylase 5-like histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 RPD3 histone deacetylase homolog histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5-like histone deacetylase 5 histone deacetylase 5 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00232 Caffeine metabolism 2
nta00562 Inositol phosphate metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00232 Caffeine metabolism 2
nta00562 Inositol phosphate metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 2
sot04145 Phagosome 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 3
ath03460 Fanconi anemia pathway 2
ath03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
gma04141 Protein processing in endoplasmic reticulum 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma03420 Nucleotide excision repair 5
gma03430 Mismatch repair 5
gma03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00770 Pantothenate and CoA biosynthesis 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi00770 Pantothenate and CoA biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
cit00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma03083 Polycomb repressive complex 2
zma03250 Viral life cycle - HIV-1 2
zma03272 Virion - Hepatitis viruses 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 7
tae03060 Protein export 3
tae04145 Phagosome 3
tae00330 Arginine and proline metabolism 3
tae00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 2
tae05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107768513 107823687 107809119 101256079 102592093 836227 836228 100788831 100807829 103854929 103860568 100250074 7493532 25493882 107949789 107887099 106439946 102622666 4343829 541883 123052167 123138381 123188026 123425379 123443565 8060653 100826085 66055277 66055304
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