ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107781874	F-box protein At4g00755
nta-r.1	107797321	F-box protein At4g00755
nta-r.1	107800568	F-box protein At4g00755-like
nta-r.1	107805398	F-box protein At4g00755
sly-u.5	101266305	F-box protein At4g00755
sly-u.5	101262254	F-box protein At4g00755-like
sly-u.5	101260764	F-box protein At4g00755
sot-r.1	102580915	F-box protein At4g00755-like
sot-r.1	102584529	F-box protein At4g00755-like
sot-r.1	102591497	F-box protein At4g00755-like
ath-u.5	AT4G00755	F-box family protein
gma-u.5	100788599	F-box protein At4g00755
gma-u.5	100788398	F-box protein At4g00755
gma-u.5	100786763	F-box protein At4g00755
bra-r.6	103836897	F-box protein At4g00755
bra-r.6	103853321	F-box protein At4g00755
vvi-u.5	100243554	F-box protein At4g00755
vvi-u.5	100245516	F-box protein At4g00755
ppo-u.5	7496929	F-box protein At4g00755
ppo-u.5	7494040	F-box protein At4g00755
mtr-u.5	120575905	F-box protein At4g00755
mtr-u.5	25479842	F-box protein At4g00755
mtr-u.5	11436454	F-box protein At4g00755
ghi-r.1	107911948	F-box protein At4g00755
ghi-r.1	107957267	F-box protein At4g00755
ghi-r.1	107955324	F-box protein At4g00755
bna-r.1	125606294	F-box protein At4g00755-like
bna-r.1	106438611	F-box protein At4g00755-like
bna-r.1	106365535	F-box protein At4g00755-like
cit-r.1	127898611	F-box protein At4g00755-like
cit-r.1	102625865	F-box protein At4g00755
osa-u.5	4331406	F-box protein At4g00755
osa-u.5	4334878	F-box protein At4g00755
zma-u.5	100274439	uncharacterized LOC100274439
tae-r.2	123074204	F-box protein At4g00755
tae-r.2	123083653	F-box protein At4g00755
hvu-r.1	123449919	F-box protein At4g00755-like
hvu-r.1	123443022	F-box protein At4g00755-like
hvu-r.1	123401636	F-box protein At4g00755-like
sbi-r.1	8059479	F-box protein At4g00755
bdi-r.1	100822793	F-box protein At4g00755
bdi-r.1	100823104	F-box protein At4g00755
bdi-r.1	100832901	F-box protein At4g00755
cre-r.1	CHLRE_11g468383v5	uncharacterized protein

Top 50 coexpressed genes to 107781874 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107781874 (nta-r.1 coexpression data)

CoexMap"107781874"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(7685 genes)

IEA

Protein

XP_016458170.1 [sequence] [blastp]
XP_075094353.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 4	(predict for XP_016458170.1)
golg 4, nucl 2, plas 1, cyto_nucl 1, chlo 1, cyto 1, vacu 1, E.R. 1, E.R._vacu 1, cysk_plas 1, mito_plas 1, cyto_E.R. 1	(predict for XP_075094353.1)

Subcellular
localization
TargetP

other 5	(predict for XP_016458170.1)
other 5	(predict for XP_075094353.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107781874	nta-r.1 for 107797321	nta-r.1 for 107800568	nta-r.1 for 107805398	sly-u.5 for 101266305	sly-u.5 for 101262254	sly-u.5 for 101260764	sot-r.1 for 102580915	sot-r.1 for 102584529	sot-r.1 for 102591497	ath-u.5 for AT4G00755	gma-u.5 for 100788599	gma-u.5 for 100788398	gma-u.5 for 100786763	bra-r.6 for 103836897	bra-r.6 for 103853321	vvi-u.5 for 100243554	vvi-u.5 for 100245516	ppo-u.5 for 7496929	ppo-u.5 for 7494040	mtr-u.5 for 120575905	mtr-u.5 for 25479842	mtr-u.5 for 11436454	ghi-r.1 for 107911948	ghi-r.1 for 107957267	ghi-r.1 for 107955324	bna-r.1 for 125606294	bna-r.1 for 106438611	bna-r.1 for 106365535	cit-r.1 for 127898611	cit-r.1 for 102625865	osa-u.5 for 4331406	osa-u.5 for 4334878	zma-u.5 for 100274439	tae-r.2 for 123074204	tae-r.2 for 123083653	hvu-r.1 for 123449919	hvu-r.1 for 123443022	hvu-r.1 for 123401636	sbi-r.1 for 8059479	bdi-r.1 for 100822793	bdi-r.1 for 100823104	bdi-r.1 for 100832901	cre-r.1 for CHLRE_11g468383v5

Ortholog

Ortholog ID: 1936

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

F-box protein At4g00755

F-box protein At4g00755-like

F-box protein At4g00755

F-box protein At4g00755-like

F-box family protein

F-box protein At4g00755

F-box protein At4g00755-like

F-box protein At4g00755

uncharacterized LOC100274439

F-box protein At4g00755

F-box protein At4g00755-like

F-box protein At4g00755

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	3
nta00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00280	Valine, leucine and isoleucine degradation	3
nta00640	Propanoate metabolism	3
nta00785	Lipoic acid metabolism	3
nta01210	2-Oxocarboxylic acid metabolism	3
nta00052	Galactose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2
ath00562	Inositol phosphate metabolism	2
ath04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00280	Valine, leucine and isoleucine degradation	3
gma00071	Fatty acid degradation	2
gma00592	alpha-Linolenic acid metabolism	2
gma01040	Biosynthesis of unsaturated fatty acids	2
gma01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01250	Biosynthesis of nucleotide sugars	3
bra00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00790	Folate biosynthesis	2
ghi01240	Biosynthesis of cofactors	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00790	Folate biosynthesis	2
ghi01240	Biosynthesis of cofactors	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi03440	Homologous recombination	2
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04136	Autophagy - other	2

Expression

Expression pattern

Entrez Gene ID^*

107797321

107828061

107828860

101266305

101262254

101249028

102580915

102591497

102590149

828014

100788599

100788398

100786763

103836897

103853321

100243554

100245516

7496929

7494040

120575905

25479842

107911948

107957267

107947294

125606294

106365535

106365539

127898611

102625865

4331406

4334878

100274439

123093834

123114522

123124013

123449919

123443022

123401636

8059479

100822793

100823104

100832901

5725049

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	1	3	2	2	2	3	3	3	2	2	1	2	3	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107781874 (nta-r.1 coexpression data)

Top 50 enrichment test to 107781874 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**