ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107788853	polyubiquitin
nta-r.1	107828598	polyubiquitin
nta-r.1	107761578	polyubiquitin-like
nta-r.1	107762509	polyubiquitin 11
sly-u.5	ubq1-1	ubiquitin
sly-u.5	101258282	polyubiquitin
sly-u.5	101256039	polyubiquitin
sot-r.1	102586619	polyubiquitin-like
sot-r.1	102587932	polyubiquitin
sot-r.1	102599865	polyubiquitin
ath-u.5	UBQ13	ubiquitin 13
gma-u.5	100817214	polyubiquitin
gma-u.5	100815545	polyubiquitin 3
gma-u.5	100800638	polyubiquitin 11
bra-r.6	103839755	polyubiquitin
bra-r.6	103874046	polyubiquitin
bra-r.6	103869289	polyubiquitin 11
vvi-u.5	100267431	polyubiquitin
vvi-u.5	100259635	uncharacterized LOC100259635
vvi-u.5	100252768	polyubiquitin 4
ppo-u.5	18106976	polyubiquitin
ppo-u.5	7480065	polyubiquitin
ppo-u.5	7485436	polyubiquitin 11
mtr-u.5	25492931	polyubiquitin
mtr-u.5	25493109	polyubiquitin-A-like
mtr-u.5	25501783	polyubiquitin 4
ghi-r.1	107925174	polyubiquitin
ghi-r.1	107928641	polyubiquitin
ghi-r.1	107933786	polyubiquitin
bna-r.1	106348160	polyubiquitin
bna-r.1	106347129	polyubiquitin-like
bna-r.1	125606450	polyubiquitin 11
cit-r.1	102618061	polyubiquitin 11
cit-r.1	102627936	uncharacterized LOC102627936
cit-r.1	102609575	polyubiquitin
osa-u.5	9272016	polyubiquitin
osa-u.5	4328390	polyubiquitin
osa-u.5	4341860	polyubiquitin
zma-u.5	103626648	polyubiquitin
zma-u.5	542322	polyubiquitin
zma-u.5	100282068	uncharacterized LOC100282068
tae-r.2	123046348	polyubiquitin
tae-r.2	123132008	polyubiquitin
tae-r.2	123136238	polyubiquitin
hvu-r.1	123406377	polyubiquitin
hvu-r.1	123401164	polyubiquitin
hvu-r.1	123401278	polyubiquitin
sbi-r.1	8076096	polyubiquitin
sbi-r.1	110430987	polyubiquitin
sbi-r.1	8079792	polyubiquitin
bdi-r.1	104581271	polyubiquitin 3
bdi-r.1	100831055	polyubiquitin
bdi-r.1	100832168	polyubiquitin
cre-r.1	CHLRE_11g467567v5	uncharacterized protein

Top 50 coexpressed genes to 107788853 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107788853 (nta-r.1 coexpression data)

CoexMap"107788853"

[Cytoscape]

Annotation

functional annotation

KEGG

nta04120 [list] [network] Ubiquitin mediated proteolysis (303 genes)

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(7685 genes)

IEA

Protein

XP_016466070.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, cyto_nucl 5, chlo 1, nucl 1

(predict for XP_016466070.1)

Subcellular
localization
TargetP

other 8

(predict for XP_016466070.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107788853	nta-r.1 for 107828598	nta-r.1 for 107761578	nta-r.1 for 107762509	sly-u.5 for ubq1-1	sly-u.5 for 101258282	sly-u.5 for 101256039	sot-r.1 for 102586619	sot-r.1 for 102587932	sot-r.1 for 102599865	ath-u.5 for UBQ13	gma-u.5 for 100817214	gma-u.5 for 100815545	gma-u.5 for 100800638	bra-r.6 for 103839755	bra-r.6 for 103874046	bra-r.6 for 103869289	vvi-u.5 for 100267431	vvi-u.5 for 100259635	vvi-u.5 for 100252768	ppo-u.5 for 18106976	ppo-u.5 for 7480065	ppo-u.5 for 7485436	mtr-u.5 for 25492931	mtr-u.5 for 25493109	mtr-u.5 for 25501783	ghi-r.1 for 107925174	ghi-r.1 for 107928641	ghi-r.1 for 107933786	bna-r.1 for 106348160	bna-r.1 for 106347129	bna-r.1 for 125606450	cit-r.1 for 102618061	cit-r.1 for 102627936	cit-r.1 for 102609575	osa-u.5 for 9272016	osa-u.5 for 4328390	osa-u.5 for 4341860	zma-u.5 for 103626648	zma-u.5 for 542322	zma-u.5 for 100282068	tae-r.2 for 123046348	tae-r.2 for 123132008	tae-r.2 for 123136238	hvu-r.1 for 123406377	hvu-r.1 for 123401164	hvu-r.1 for 123401278	sbi-r.1 for 8076096	sbi-r.1 for 110430987	sbi-r.1 for 8079792	bdi-r.1 for 104581271	bdi-r.1 for 100831055	bdi-r.1 for 100832168	cre-r.1 for CHLRE_11g467567v5

Ortholog

Ortholog ID: 257

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

ubq1-1

UBQ13

UBQ3

UBQ10

SUBI-2

Function^*

polyubiquitin

ubiquitin

polyubiquitin

polyubiquitin-like

polyubiquitin

ubiquitin 13

polyubiquitin 3

polyubiquitin 10

polyubiquitin

polyubiquitin 11

polyubiquitin

uncharacterized LOC100259635

polyubiquitin 4

polyubiquitin

polyubiquitin 11

polyubiquitin

polyubiquitin 4

polyubiquitin

polyubiquitin 11

polyubiquitin

polyubiquitin 11

polyubiquitin

uncharacterized LOC102627936

polyubiquitin

polyubiquitin-like

polyubiquitin

polyubiquitin 3-like

polyubiquitin

uncharacterized LOC100282068

polyubiquitin 11

polyubiquitin

polyubiquitin 11

polyubiquitin

polyubiquitin 3

polyubiquitin

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	2
sly04120	Ubiquitin mediated proteolysis	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2
sly04120	Ubiquitin mediated proteolysis	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	3
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	7
gma04141	Protein processing in endoplasmic reticulum	6
gma03040	Spliceosome	3
gma04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	6
gma04141	Protein processing in endoplasmic reticulum	4
gma03040	Spliceosome	3
gma04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	4
vvi00500	Starch and sucrose metabolism	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	4
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	4
vvi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ppo00350	Tyrosine metabolism	2
ppo00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	5
ghi00071	Fatty acid degradation	2
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00310	Lysine degradation	2
ghi00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5
bna00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	3
osa04141	Protein processing in endoplasmic reticulum	2
osa03015	mRNA surveillance pathway	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	3
osa04120	Ubiquitin mediated proteolysis	3
osa03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00250	Alanine, aspartate and glutamate metabolism	2
osa00520	Amino sugar and nucleotide sugar metabolism	2
osa01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	7
hvu00940	Phenylpropanoid biosynthesis	3
hvu00250	Alanine, aspartate and glutamate metabolism	2
hvu00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	8
hvu00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	5
sbi00030	Pentose phosphate pathway	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	5
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	9
bdi03010	Ribosome	3
bdi03083	Polycomb repressive complex	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	4
cre04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

107788853

107782949

107786552

101267758

101258282

101256039

102586619

102587932

102599865

842845

831899

825880

100817214

100791065

114515510

103839755

103839752

103838224

100267431

100259635

100252768

7480065

7479088

18095912

25501783

11421243

11431263

107899654

107919923

107918137

106369026

106349084

106372626

102627936

102629380

102622806

4328390

4341860

4337080

103626648

542322

100282068

123143946

123143944

123143945

123406377

123401278

8076096

110430987

8063786

104581271

100831055

104585556

5726921

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	1	3	3	3	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107788853 (nta-r.1 coexpression data)

Top 50 enrichment test to 107788853 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**