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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107789691   lycopene epsilon cyclase, chloroplastic 
 nta-r.1   107830918   lycopene epsilon cyclase, chloroplastic 
 sly-u.5   CrtL-e-1   lycopene epsilon-cyclase 
 sot-r.1   102577922   lycopene epsilon cyclase, chloroplastic 
 ath-u.5   LUT2   Lycopene beta/epsilon cyclase protein 
 gma-u.5   100790686   lycopene epsilon cyclase, chloroplastic 
 gma-u.5   100788180   lycopene epsilon cyclase, chloroplastic 
 bra-r.6   103845139   lycopene epsilon cyclase, chloroplastic 
 bra-r.6   103856778   lycopene epsilon cyclase, chloroplastic 
 vvi-u.5   LECY1   lycopene epsilon cyclase, chloroplastic-like 
 ppo-u.5   18100367   lycopene epsilon cyclase, chloroplastic 
 mtr-u.5   11438775   lycopene epsilon cyclase, chloroplastic 
 ghi-r.1   107937734   lycopene epsilon cyclase, chloroplastic 
 ghi-r.1   107907128   lycopene epsilon cyclase, chloroplastic 
 bna-r.1   106436514   lycopene epsilon cyclase, chloroplastic 
 bna-r.1   106371493   lycopene epsilon cyclase, chloroplastic-like 
 bna-r.1   106387316   lycopene epsilon cyclase, chloroplastic 
 cit-r.1   102578059   lycopene epsilon cyclase, chloroplastic 
 osa-u.5   4324196   lycopene epsilon cyclase, chloroplastic 
 zma-u.5   100280448   uncharacterized LOC100280448 
 tae-r.2   123069994   lycopene epsilon cyclase, chloroplastic 
 hvu-r.1   123443767   lycopene epsilon cyclase, chloroplastic 
 sbi-r.1   8078213   lycopene epsilon cyclase, chloroplastic 
 bdi-r.1   100821922   lycopene epsilon cyclase, chloroplastic 
 cre-r.1   CHLRE_06g267600v5   uncharacterized protein 

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Top 50 coexpressed genes to 107789691 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107789691 (nta-r.1 coexpression data)

CoexMap"107789691"


ntaLOC107789691 | Entrez gene ID : 107789691    
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 2 2 1 1 1 2 3 1 1 1 1 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta00906 [list] [network] Carotenoid biosynthesis (74 genes)
GO BP
GO:0016117 [list] [network] carotenoid biosynthetic process  (25 genes)  IEA  
GO CC
GO MF
GO:0016705 [list] [network] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  (690 genes)  IEA  
Protein NP_001312406.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  golg_plas 4,  golg 1,  chlo 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for NP_001312406.1)
Subcellular
localization
TargetP
mito 4,  chlo 3  (predict for NP_001312406.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107789691
nta-r.1
for
107830918
sly-u.5
for
CrtL-e-1
sot-r.1
for
102577922
ath-u.5
for
LUT2
gma-u.5
for
100790686
gma-u.5
for
100788180
bra-r.6
for
103845139
bra-r.6
for
103856778
vvi-u.5
for
LECY1
ppo-u.5
for
18100367
mtr-u.5
for
11438775
ghi-r.1
for
107937734
ghi-r.1
for
107907128
bna-r.1
for
106436514
bna-r.1
for
106371493
bna-r.1
for
106387316
cit-r.1
for
102578059
osa-u.5
for
4324196
zma-u.5
for
100280448
tae-r.2
for
123069994
hvu-r.1
for
123443767
sbi-r.1
for
8078213
bdi-r.1
for
100821922
cre-r.1
for
CHLRE_06g267600v5


Ortholog ID: 9742
Species nta nta sly sot ath gma gma bra bra vvi ppo mtr ghi ghi bna bna bna cit osa zma tae hvu sbi bdi cre
Symbol LOC107789691 LOC107830918 CrtL-e-1 LOC102577922 LUT2 LOC100790686 LOC100788180 LOC103845139 LOC103856778 LECY1 LOC18100367 LOC11438775 LOC107937734 LOC107907128 LOC106436514 LOC106387316 LOC106418464 LOC102578059 LOC4324196 LOC100280448 LOC123069994 LOC123443767 LOC8078213 LOC100821922 CHLRE_06g267600v5
Function* lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic lycopene epsilon-cyclase lycopene epsilon cyclase, chloroplastic Lycopene beta/epsilon cyclase protein lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic-like lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic-like lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic uncharacterized LOC100280448 lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic lycopene epsilon cyclase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 10
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 7
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 3
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 10
gma00906 Carotenoid biosynthesis 2
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 9
gma01240 Biosynthesis of cofactors 3
gma00900 Terpenoid backbone biosynthesis 2
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra00195 Photosynthesis 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra00195 Photosynthesis 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 3
mtr00710 Carbon fixation by Calvin cycle 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 7
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 9
ghi00190 Oxidative phosphorylation 2
ghi00750 Vitamin B6 metabolism 2
ghi03010 Ribosome 2
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
bna00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
bna00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
bna00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
cit00906 Carotenoid biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 10
zma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 6
sbi01240 Biosynthesis of cofactors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 3
bdi01240 Biosynthesis of cofactors 3
bdi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 3
cre00010 Glycolysis / Gluconeogenesis 2
cre00030 Pentose phosphate pathway 2
cre01200 Carbon metabolism 2
cre01040 Biosynthesis of unsaturated fatty acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107789691 107830918 544129 102577922 835806 100790686 100788180 103845139 103856778 100259482 18100367 11438775 107937734 107907128 106436514 106387316 106418464 102578059 4324196 100280448 123069994 123443767 8078213 100821922 5721910
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