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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107792812   diaminopimelate decarboxylase 1, chloroplastic 
 sly-u.5   101249215   diaminopimelate decarboxylase 1, chloroplastic 
 ath-u.5   AT3G14390   Pyridoxal-dependent decarboxylase family protein 
 ath-u.5   AT5G11880   Pyridoxal-dependent decarboxylase family protein 
 gma-u.5   100786832   diaminopimelate decarboxylase 2, chloroplastic-like 
 gma-u.5   100791677   diaminopimelate decarboxylase 1, chloroplastic 
 gma-u.5   100809499   diaminopimelate decarboxylase 2, chloroplastic-like 
 vvi-u.5   100265358   diaminopimelate decarboxylase 2, chloroplastic 
 vvi-u.5   100247076   diaminopimelate decarboxylase 2, chloroplastic 
 ppo-u.5   7470003   diaminopimelate decarboxylase 2, chloroplastic 
 ppo-u.5   7464016   diaminopimelate decarboxylase 2, chloroplastic 
 mtr-u.5   11429414   diaminopimelate decarboxylase 1, chloroplastic 
 osa-u.5   4329234   probable diaminopimelate decarboxylase, chloroplastic 
 zma-u.5   100217223   Diaminopimelate decarboxylase 2 chloroplastic 
 zma-u.5   100273126   diaminopimelate decarboxylase 

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Top 50 coexpressed genes to 107792812 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107792812 (nta-r.1 coexpression data)

CoexMap"107792812"


ntaLOC107792812 | Entrez gene ID : 107792812      
Species nta sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot cre tae
Paralog 1 1 2 3 2 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta00300 [list] [network] Lysine biosynthesis (21 genes)
nta00470 [list] [network] D-Amino acid metabolism (11 genes)
nta01230 [list] [network] Biosynthesis of amino acids (462 genes)
GO BP
GO:0009089 [list] [network] lysine biosynthetic process via diaminopimelate  (16 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1165 genes)  IEA  
GO MF
GO:0008836 [list] [network] diaminopimelate decarboxylase activity  (2 genes)  IEA  
Protein XP_016470536.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_016470536.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016470536.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107792812
sly-u.5
for
101249215
ath-u.5
for
AT3G14390
ath-u.5
for
AT5G11880
gma-u.5
for
100786832
gma-u.5
for
100791677
gma-u.5
for
100809499
vvi-u.5
for
100265358
vvi-u.5
for
100247076
ppo-u.5
for
7470003
ppo-u.5
for
7464016
mtr-u.5
for
11429414
osa-u.5
for
4329234
zma-u.5
for
100217223
zma-u.5
for
100273126


Ortholog ID: 5992
Species nta nta sly sot ath ath gma gma bra bra vvi vvi ppo ppo mtr ghi ghi bna bna cit osa zma zma tae tae hvu sbi sbi bdi cre
Symbol LOC107794250 LOC107792812 LOC101249215 LOC102593561 AT5G11880 AT3G14390 LOC100809499 LOC100791677 LOC103846688 LOC103855942 LOC100247076 LOC100265358 LOC7464016 LOC7470003 LOC11429414 LOC107942432 LOC107945027 LOC106424616 LOC106430932 LOC102612099 LOC4329234 LOC100217223 LOC100273126 LOC123136321 LOC123132276 LOC123401308 LOC8066978 LOC110435303 LOC100834023 CHLRE_01g050100v5
Function* diaminopimelate decarboxylase 1, chloroplastic diaminopimelate decarboxylase 1, chloroplastic diaminopimelate decarboxylase 1, chloroplastic diaminopimelate decarboxylase 1, chloroplastic-like Pyridoxal-dependent decarboxylase family protein Pyridoxal-dependent decarboxylase family protein diaminopimelate decarboxylase 2, chloroplastic-like diaminopimelate decarboxylase 1, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 1, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic-like diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 1, chloroplastic-like probable diaminopimelate decarboxylase, chloroplastic Diaminopimelate decarboxylase 2 chloroplastic diaminopimelate decarboxylase probable diaminopimelate decarboxylase, chloroplastic probable diaminopimelate decarboxylase, chloroplastic probable diaminopimelate decarboxylase, chloroplastic probable diaminopimelate decarboxylase, chloroplastic uncharacterized LOC110435303 probable diaminopimelate decarboxylase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 10
nta00300 Lysine biosynthesis 5
nta00470 D-Amino acid metabolism 5
nta00010 Glycolysis / Gluconeogenesis 3
nta00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
nta01230 Biosynthesis of amino acids 8
nta00300 Lysine biosynthesis 4
nta00470 D-Amino acid metabolism 4
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 12
sly00260 Glycine, serine and threonine metabolism 3
sly01210 2-Oxocarboxylic acid metabolism 3
sly00300 Lysine biosynthesis 3
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 6
sot00300 Lysine biosynthesis 4
sot01240 Biosynthesis of cofactors 3
sot01210 2-Oxocarboxylic acid metabolism 3
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 15
ath01210 2-Oxocarboxylic acid metabolism 8
ath00220 Arginine biosynthesis 5
ath00300 Lysine biosynthesis 5
ath01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 15
ath01210 2-Oxocarboxylic acid metabolism 7
ath00300 Lysine biosynthesis 5
ath00290 Valine, leucine and isoleucine biosynthesis 5
ath00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma01230 Biosynthesis of amino acids 3
gma00300 Lysine biosynthesis 2
gma00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 7
gma00220 Arginine biosynthesis 4
gma03010 Ribosome 2
gma00300 Lysine biosynthesis 2
gma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00230 Purine metabolism 3
bra00970 Aminoacyl-tRNA biosynthesis 3
bra00300 Lysine biosynthesis 3
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00300 Lysine biosynthesis 3
bra01210 2-Oxocarboxylic acid metabolism 3
bra00970 Aminoacyl-tRNA biosynthesis 2
bra00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi01230 Biosynthesis of amino acids 5
vvi00290 Valine, leucine and isoleucine biosynthesis 2
vvi01210 2-Oxocarboxylic acid metabolism 2
vvi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 6
ppo00300 Lysine biosynthesis 3
ppo01230 Biosynthesis of amino acids 3
ppo00470 D-Amino acid metabolism 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo01230 Biosynthesis of amino acids 3
ppo00300 Lysine biosynthesis 2
ppo00470 D-Amino acid metabolism 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 7
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi00300 Lysine biosynthesis 3
ghi00470 D-Amino acid metabolism 3
ghi00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 11
ghi00300 Lysine biosynthesis 3
ghi00470 D-Amino acid metabolism 3
ghi00260 Glycine, serine and threonine metabolism 3
ghi00460 Cyanoamino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00300 Lysine biosynthesis 4
bna00470 D-Amino acid metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00240 Pyrimidine metabolism 3
bna00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00300 Lysine biosynthesis 4
bna00470 D-Amino acid metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00240 Pyrimidine metabolism 3
bna00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00300 Lysine biosynthesis 3
cit01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 10
osa00300 Lysine biosynthesis 5
osa00261 Monobactam biosynthesis 3
osa01200 Carbon metabolism 3
osa01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 4
zma00300 Lysine biosynthesis 2
zma00470 D-Amino acid metabolism 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 3
zma00300 Lysine biosynthesis 2
zma00470 D-Amino acid metabolism 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00300 Lysine biosynthesis 9
tae01230 Biosynthesis of amino acids 9
tae03015 mRNA surveillance pathway 4
tae00261 Monobactam biosynthesis 3
tae00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 9
tae00300 Lysine biosynthesis 8
tae00470 D-Amino acid metabolism 3
tae03015 mRNA surveillance pathway 2
tae00261 Monobactam biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu00970 Aminoacyl-tRNA biosynthesis 3
hvu00450 Selenocompound metabolism 2
hvu00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi01240 Biosynthesis of cofactors 3
sbi03010 Ribosome 2
sbi00300 Lysine biosynthesis 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 5
bdi00290 Valine, leucine and isoleucine biosynthesis 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi00220 Arginine biosynthesis 2
bdi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 9
cre01230 Biosynthesis of amino acids 7
cre00300 Lysine biosynthesis 2
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre00220 Arginine biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107794250 107792812 101249215 102593561 831061 820660 100809499 100791677 103846688 103855942 100247076 100265358 7464016 7470003 11429414 107942432 107945027 106424616 106430932 102612099 4329234 100217223 100273126 123136321 123132276 123401308 8066978 110435303 100834023 5715731
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