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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   AG1   floral homeotic protein AGAMOUS 
 sly-u.5   MBP3   agamous-like MADS-box protein MBP3 
 ath-u.5   AG   K-box region and MADS-box transcription factor family protein 
 ath-u.5   STK   K-box region and MADS-box transcription factor family protein 
 gma-u.5   AGL1L   agamous-like MADS-box protein AGL1-like 
 gma-u.5   100782733   agamous-like MADS-box protein MADS1 
 gma-u.5   100808734   agamous-like MADS-box protein MADS1 
 bra-r.6   103856965   floral homeotic protein AGAMOUS 
 vvi-u.5   MADS5   MADS-box protein 5 
 vvi-u.5   AG   agamous 
 vvi-u.5   MADS1   MAD-box transcripion factor 
 ghi-r.1   107957499   agamous-like MADS-box protein AGL11 
 ghi-r.1   107904906   agamous-like MADS-box protein AGL11 
 ghi-r.1   107914052   agamous-like MADS-box protein AGL11 
 bna-r.1   106436444   agamous-like MADS-box protein AGL11 
 bna-r.1   106428192   agamous-like MADS-box protein AGL1 
 bna-r.1   106444428   floral homeotic protein AGAMOUS-like 
 cit-r.1   102620453   agamous-like MADS-box protein AGL11 
 cit-r.1   102622291   agamous-like MADS-box protein MADS1 
 osa-u.5   4324888   MADS-box transcription factor 21-like 
 osa-u.5   9271572   MADS-box transcription factor 3-like 
 zma-u.5   542037   Agamous-like MADS-box protein AGL5 
 zma-u.5   100037764   AGAMOUS-like protein 
 zma-u.5   542244   homologue of Arabidopsis gene AGAMOUS 
 tae-r.2   123041886   MADS-box transcription factor 58 
 tae-r.2   123077697   MADS-box transcription factor 3 
 tae-r.2   100136964   MADS-box transcription factor 21 
 sbi-r.1   8080509   MADS-box transcription factor 3 
 sbi-r.1   110430121   MADS-box transcription factor 3-like 
 bdi-r.1   100841720   MADS-box transcription factor 3 
 bdi-r.1   100824190   MADS-box transcription factor 58-like 

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Top 50 coexpressed genes to AG1 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AG1 (sly-u.5 coexpression data)

CoexMap"107793246"


ntaLOC107793246 | Entrez gene ID : 107793246      
Species sly ath gma bra vvi ghi bna cit osa zma tae sbi bdi sot cre ppo nta mtr hvu
Paralog 2 2 3 1 3 3 3 2 2 3 3 2 2 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (239 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (4980 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (454 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1129 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (2091 genes)  IEA  
Protein XP_016471057.1 [sequence] [blastp]
XP_016471064.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_016471057.1)
nucl 4,  cyto 4,  cyto_E.R. 2,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_016471064.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for XP_016471057.1)
other 8  (predict for XP_016471064.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
AG1
sly-u.5
for
MBP3
ath-u.5
for
AG
ath-u.5
for
STK
gma-u.5
for
AGL1L
gma-u.5
for
100782733
gma-u.5
for
100808734
bra-r.6
for
103856965
vvi-u.5
for
MADS5
vvi-u.5
for
AG
vvi-u.5
for
MADS1
ghi-r.1
for
107957499
ghi-r.1
for
107904906
ghi-r.1
for
107914052
bna-r.1
for
106436444
bna-r.1
for
106428192
bna-r.1
for
106444428
cit-r.1
for
102620453
cit-r.1
for
102622291
osa-u.5
for
4324888
osa-u.5
for
9271572
zma-u.5
for
542037
zma-u.5
for
100037764
zma-u.5
for
542244
tae-r.2
for
123041886
tae-r.2
for
123077697
tae-r.2
for
100136964
sbi-r.1
for
8080509
sbi-r.1
for
110430121
bdi-r.1
for
100841720
bdi-r.1
for
100824190


Ortholog ID: 775
Species nta sly sly sly ath ath gma gma gma bra bra bra vvi vvi vvi ghi ghi ghi bna bna bna cit cit osa osa osa zma zma zma tae tae tae sbi sbi bdi bdi
Symbol LOC107777063 AG1 MBP3 TAGL1 STK SHP1 LOC100808734 LOC100776263 AGL11 LOC103856965 LOC103861026 LOC103866661 MADS5 AG MADS1 LOC107904906 LOC107914052 LOC107959674 LOC106428192 LOC106353173 LOC106397223 LOC102620453 LOC102622291 LOC4324888 LOC9271572 LOC4338067 LOC542037 LOC542244 LOC542039 LOC100136964 LOC100136965 LOC100136998 LOC8080509 LOC110430121 LOC100841720 LOC100824190
Function* agamous-like MADS-box protein AGL11 floral homeotic protein AGAMOUS agamous-like MADS-box protein MBP3 TAGL1 transcription factor K-box region and MADS-box transcription factor family protein K-box region and MADS-box transcription factor family protein agamous-like MADS-box protein MADS1 floral homeotic protein AGAMOUS-like MADS domain transporter AGL11 floral homeotic protein AGAMOUS floral homeotic protein AGAMOUS agamous-like MADS-box protein AGL5 MADS-box protein 5 agamous MAD-box transcripion factor agamous-like MADS-box protein AGL11 agamous-like MADS-box protein AGL11 agamous-like MADS-box protein MADS1 agamous-like MADS-box protein AGL1 agamous-like MADS-box protein AGL1 agamous-like MADS-box protein AGL11 agamous-like MADS-box protein AGL11 agamous-like MADS-box protein MADS1 MADS-box transcription factor 21-like MADS-box transcription factor 3-like MADS-box transcription factor 58-like Agamous-like MADS-box protein AGL5 homologue of Arabidopsis gene AGAMOUS MADS-box transcription factor 21 MADS-box transcription factor 21 MADS-box transcription factor 3 MADS-box transcription factor 21 MADS-box transcription factor 3 MADS-box transcription factor 3-like MADS-box transcription factor 3 MADS-box transcription factor 58-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
sly00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00640 Propanoate metabolism 2
ghi00785 Lipoic acid metabolism 2
ghi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00941 Flavonoid biosynthesis 3
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00062 Fatty acid elongation 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma00010 Glycolysis / Gluconeogenesis 2
zma00053 Ascorbate and aldarate metabolism 2
zma00071 Fatty acid degradation 2
zma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 2
bdi00941 Flavonoid biosynthesis 2
bdi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107777063 543840 101249093 543841 826586 825047 100808734 100776263 100301905 103856965 103861026 103866661 100232870 100261787 100232864 107904906 107914052 107959674 106428192 106353173 106397223 102620453 102622291 4324888 9271572 4338067 542037 542244 542039 100136964 100136965 100136998 8080509 110430121 100841720 100824190
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