ATTED-II : GeneCoexpression result

Species	Gene	Description
nta-r.1	107800187	uncharacterized LOC107800187
nta-r.1	107828457	uncharacterized LOC107828457
sly-u.5	101260563	uncharacterized LOC101260563
sot-r.1	102589296	uncharacterized LOC102589296
ath-u.5	PTAC13	plastid transcriptionally active 13
gma-u.5	100815839	uncharacterized LOC100815839
bra-r.6	103848245	transcription termination/antitermination protein NusG
vvi-u.5	100264906	uncharacterized LOC100264906
ppo-u.5	7487286	uncharacterized LOC7487286
mtr-u.5	11414284	uncharacterized LOC11414284
ghi-r.1	107899023	uncharacterized LOC107899023
bna-r.1	106427979	uncharacterized LOC106427979
bna-r.1	125586304	uncharacterized LOC125586304
cit-r.1	102628920	uncharacterized LOC102628920
osa-u.5	4334632	uncharacterized LOC4334632
zma-u.5	100284988	transcription termination factor nusG family protein
tae-r.2	123105727	transcription termination/antitermination protein NusG
tae-r.2	123114058	transcription termination/antitermination protein NusG
tae-r.2	123123550	transcription termination/antitermination protein NusG
hvu-r.1	123453113	transcription termination/antitermination protein NusG
sbi-r.1	8079705	transcription termination/antitermination protein NusG
bdi-r.1	100820982	transcription termination/antitermination protein NusG

Annotation

functional annotation

KEGG

GO BP

GO:0140673 [list] [network] transcription elongation-coupled chromatin remodeling	(14 genes)	IEA
GO:0006354 [list] [network] DNA-templated transcription elongation	(61 genes)	IEA

GO CC

GO MF

Protein

XP_016478826.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, mito 1

(predict for XP_016478826.1)

Subcellular
localization
TargetP

chlo 7

(predict for XP_016478826.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107800187	nta-r.1 for 107828457	sly-u.5 for 101260563	sot-r.1 for 102589296	ath-u.5 for PTAC13	gma-u.5 for 100815839	bra-r.6 for 103848245	vvi-u.5 for 100264906	ppo-u.5 for 7487286	mtr-u.5 for 11414284	ghi-r.1 for 107899023	bna-r.1 for 106427979	bna-r.1 for 125586304	cit-r.1 for 102628920	osa-u.5 for 4334632	zma-u.5 for 100284988	tae-r.2 for 123105727	tae-r.2 for 123114058	tae-r.2 for 123123550	hvu-r.1 for 123453113	sbi-r.1 for 8079705	bdi-r.1 for 100820982

Ortholog

Ortholog ID: 11673

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

PTAC13

Function^*

uncharacterized LOC107800187

uncharacterized LOC107828457

uncharacterized LOC101260563

uncharacterized LOC102589296

plastid transcriptionally active 13

uncharacterized LOC100815839

transcription termination/antitermination protein NusG

uncharacterized LOC100264906

uncharacterized LOC7487286

uncharacterized LOC11414284

uncharacterized LOC107899023

uncharacterized LOC106427979

uncharacterized LOC125586304

uncharacterized LOC102628920

uncharacterized LOC4334632

transcription termination factor nusG family protein

transcription termination/antitermination protein NusG

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00051	Fructose and mannose metabolism	2
nta00710	Carbon fixation by Calvin cycle	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	4
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03060	Protein export	2
gma00860	Porphyrin metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	6
cit00195	Photosynthesis	2
cit00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4
tae03015	mRNA surveillance pathway	3
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae03015	mRNA surveillance pathway	3
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	3
bdi03018	RNA degradation	3
bdi00970	Aminoacyl-tRNA biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

107800187

107828457

101260563

102589296

820077

100815839

103848245

100264906

7487286

11414284

107899023

106427979

125586304

102628920

4334632

100284988

123105727

123114058

123123550

123453113

8079705

100820982

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107800187 (nta-r.1 coexpression data)

Top 50 enrichment test to 107800187 (nta-r.1 coexpression data)


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	1	1	1	1	1	1	1	1	1	2	1	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107800187 (nta-r.1 coexpression data)

Top 50 enrichment test to 107800187 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**