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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107800869   proteasome subunit beta type-3-A-like 
 sly-u.5   101262104   uncharacterized LOC101262104 
 sly-u.5   101263371   PHD finger-containing protein 1-like 
 sly-u.5   101248666   PHD finger-containing protein 1-like 
 ath-u.5   AT1G43770   RING/FYVE/PHD zinc finger superfamily protein 
 gma-u.5   102666082   uncharacterized LOC102666082 
 gma-u.5   100817132   uncharacterized LOC100817132 
 vvi-u.5   104882625   uncharacterized LOC104882625 
 ppo-u.5   7469209   uncharacterized LOC7469209 
 mtr-u.5   25496037   uncharacterized LOC25496037 
 osa-u.5   4351571   uncharacterized LOC4351571 
 osa-u.5   4349846   ASI1-immunoprecipitated protein 2 
 zma-u.5   103640797   RING/FYVE/PHD zinc finger superfamily protein 
 zma-u.5   100276865   uncharacterized LOC100276865 

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Top 50 coexpressed genes to 107800869 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107800869 (nta-r.1 coexpression data)

CoexMap"107800869"


ntaLOC107800869 | Entrez gene ID : 107800869      
Species nta sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot cre tae
Paralog 1 3 1 2 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0034244 [list] [network] negative regulation of transcription elongation by RNA polymerase II  (13 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (236 genes)  IEA  
GO CC
GO:0019774 [list] [network] proteasome core complex, beta-subunit complex  (4 genes)  IEA  
GO:0005839 [list] [network] proteasome core complex  (63 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (8458 genes)  IEA  
GO MF
GO:0140566 [list] [network] histone reader activity  (13 genes)  IEA  
Protein XP_016479602.1 [sequence] [blastp]
XP_016479605.2 [sequence] [blastp]
XP_016479606.2 [sequence] [blastp]
XP_075089594.1 [sequence] [blastp]
XP_075089595.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 3,  cyto 2,  extr 2  (predict for XP_016479602.1)
chlo 9,  extr 1,  E.R._vacu 1  (predict for XP_016479605.2)
cyto 4,  chlo 4,  nucl 1  (predict for XP_016479606.2)
chlo 4,  nucl 4,  cyto 1,  extr 1  (predict for XP_075089594.1)
chlo 9,  extr 1,  E.R._vacu 1  (predict for XP_075089595.1)
Subcellular
localization
TargetP
scret 9,  other 3  (predict for XP_016479602.1)
mito 6,  other 4  (predict for XP_016479605.2)
scret 7,  other 3  (predict for XP_016479606.2)
scret 9,  other 3  (predict for XP_075089594.1)
mito 6,  other 4  (predict for XP_075089595.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107800869
sly-u.5
for
101262104
sly-u.5
for
101263371
sly-u.5
for
101248666
ath-u.5
for
AT1G43770
gma-u.5
for
102666082
gma-u.5
for
100817132
vvi-u.5
for
104882625
ppo-u.5
for
7469209
mtr-u.5
for
25496037
osa-u.5
for
4351571
osa-u.5
for
4349846
zma-u.5
for
103640797
zma-u.5
for
100276865


Ortholog ID: 3058
Species nta nta sly sly ath gma bra vvi ppo bna bna cit cit osa zma zma tae sbi sbi bdi bdi
Symbol LOC107783956 LOC107776801 LOC101263371 LOC101262104 AT1G43770 LOC102666082 LOC103871409 LOC104882625 LOC7469130 LOC106405939 LOC106346123 LOC102607669 LOC102625994 LOC4351571 LOC100276865 LOC103640797 LOC123157820 LOC8073472 LOC8073473 LOC100822533 LOC112270935
Function* PHD finger-containing protein 1 PHD finger-containing protein 1-like PHD finger-containing protein 1-like uncharacterized LOC101262104 RING/FYVE/PHD zinc finger superfamily protein uncharacterized LOC102666082 general transcription factor IIF subunit 1 uncharacterized LOC104882625 uncharacterized LOC7469130 uncharacterized LOC106405939 uncharacterized LOC106346123 uncharacterized LOC102607669 uncharacterized LOC102625994 uncharacterized LOC4351571 uncharacterized LOC100276865 RING/FYVE/PHD zinc finger superfamily protein uncharacterized LOC123157820 uncharacterized LOC8073472 uncharacterized LOC8073473 uncharacterized LOC100822533 uncharacterized LOC112270935
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta03430 Mismatch repair 2
nta03460 Fanconi anemia pathway 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 10
sly03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 4
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107783956 107776801 101263371 101262104 840971 102666082 103871409 104882625 7469130 106405939 106346123 102607669 102625994 4351571 100276865 103640797 123157820 8073472 8073473 100822533 112270935
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