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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107820657   uncharacterized LOC107820657 
 nta-r.1   107818890   uncharacterized LOC107818890 
 nta-r.1   107804991   uncharacterized LOC107804991 
 sly-u.5   101257880   protein YELLOW LEAF 1, choloroplastic-like 
 sly-u.5   101255489   protein YELLOW LEAF 1, choloroplastic 
 sot-r.1   102600615   uncharacterized LOC102600615 
 sot-r.1   102588854   uncharacterized LOC102588854 
 ath-u.5   EMB1303   embryo defective 1303 
 gma-u.5   100306022   uncharacterized LOC100306022 
 gma-u.5   100817121   protein YELLOW LEAF 1, choloroplastic 
 bra-r.6   103835209   protein YELLOW LEAF 1, choloroplastic 
 bra-r.6   103828805   protein YELLOW LEAF 1, choloroplastic 
 vvi-u.5   100244627   protein FERTILITY RESTORER RF2, mitochondrial 
 ppo-u.5   7487562   protein YELLOW LEAF 1, choloroplastic 
 ppo-u.5   18103522   protein YELLOW LEAF 1, choloroplastic 
 mtr-u.5   25490736   protein FERTILITY RESTORER RF2, mitochondrial 
 ghi-r.1   107947452   uncharacterized LOC107947452 
 bna-r.1   111199208   protein YELLOW LEAF 1, choloroplastic-like 
 bna-r.1   106451278   protein YELLOW LEAF 1, choloroplastic-like 
 bna-r.1   BNAC03G59750D   protein YELLOW LEAF 1, choloroplastic 
 cit-r.1   102623881   protein FERTILITY RESTORER RF2, mitochondrial-like 
 cit-r.1   102614333   hypothetical protein 

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Top 50 coexpressed genes to 107820657 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107820657 (nta-r.1 coexpression data)

CoexMap"107811015"


ntaLOC107811015 | Entrez gene ID : 107811015      
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit zma cre sbi tae osa hvu bdi
Paralog 3 2 2 1 2 2 1 2 1 1 3 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010027 [list] [network] thylakoid membrane organization  (26 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (114 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1165 genes)  IEA  
GO MF
Protein XP_075104671.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  cyto 1,  mito 1,  plas 1,  vacu 1,  cysk_nucl 1,  mito_plas 1,  cyto_plas 1  (predict for XP_075104671.1)
Subcellular
localization
TargetP
other 4,  chlo 3  (predict for XP_075104671.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107820657
nta-r.1
for
107818890
nta-r.1
for
107804991
sly-u.5
for
101257880
sly-u.5
for
101255489
sot-r.1
for
102600615
sot-r.1
for
102588854
ath-u.5
for
EMB1303
gma-u.5
for
100306022
gma-u.5
for
100817121
bra-r.6
for
103835209
bra-r.6
for
103828805
vvi-u.5
for
100244627
ppo-u.5
for
7487562
ppo-u.5
for
18103522
mtr-u.5
for
25490736
ghi-r.1
for
107947452
bna-r.1
for
111199208
bna-r.1
for
106451278
bna-r.1
for
BNAC03G59750D
cit-r.1
for
102623881
cit-r.1
for
102614333


Ortholog ID: 6734
Species nta nta nta sly sly sot sot ath gma gma bra bra vvi ppo ppo mtr ghi ghi bna bna bna cit cit
Symbol LOC107820657 LOC107818890 LOC107804991 LOC101257880 LOC101255489 LOC102600615 LOC102588854 EMB1303 LOC100306022 LOC100817121 LOC103835209 LOC103828805 LOC100244627 LOC7487562 LOC18103522 LOC25490736 LOC107947452 LOC107932660 LOC106451278 BNAC03G59750D LOC106436400 LOC102623881 LOC102614333
Function* uncharacterized LOC107820657 uncharacterized LOC107818890 uncharacterized LOC107804991 protein YELLOW LEAF 1, choloroplastic-like protein YELLOW LEAF 1, choloroplastic uncharacterized LOC102600615 uncharacterized LOC102588854 embryo defective 1303 uncharacterized LOC100306022 protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic protein FERTILITY RESTORER RF2, mitochondrial protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic protein FERTILITY RESTORER RF2, mitochondrial uncharacterized LOC107947452 uncharacterized LOC107932660 protein YELLOW LEAF 1, choloroplastic-like protein YELLOW LEAF 1, choloroplastic protein YELLOW LEAF 1, choloroplastic protein FERTILITY RESTORER RF2, mitochondrial-like hypothetical protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03060 Protein export 2
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 3
ath03083 Polycomb repressive complex 2
ath04120 Ubiquitin mediated proteolysis 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
ppo00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna04120 Ubiquitin mediated proteolysis 3
bna03060 Protein export 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 4
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 8
cit03040 Spliceosome 2
cit04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107820657 107818890 107804991 101257880 101255489 102600615 102588854 842073 100306022 100817121 103835209 103828805 100244627 7487562 18103522 25490736 107947452 107932660 106451278 106439711 106436400 102623881 102614333
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