ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107828656	uncharacterized LOC107828656
nta-r.1	107785924	uncharacterized LOC107785924
nta-r.1	107778310	uncharacterized LOC107778310
nta-r.1	107791000	uncharacterized LOC107791000
sly-u.5	101249383	uncharacterized LOC101249383
sly-u.5	101256453	uncharacterized LOC101256453
sly-u.5	101264251	uncharacterized LOC101264251
sot-r.1	102596732	uncharacterized LOC102596732
sot-r.1	102593861	uncharacterized LOC102593861
sot-r.1	102578157	uncharacterized LOC102578157
ath-u.5	AT3G06330	RING/U-box superfamily protein
ath-u.5	AT3G09760	RING/U-box superfamily protein
ath-u.5	AT5G03180	RING/U-box superfamily protein
gma-u.5	100798208	uncharacterized LOC100798208
gma-u.5	100791140	E3 ubiquitin-protein ligase MARCHF7
gma-u.5	100811800	uncharacterized LOC100811800
bra-r.6	103845473	uncharacterized LOC103845473
bra-r.6	103849984	uncharacterized LOC103849984
bra-r.6	108870098	probable E3 ubiquitin-protein ligase MARCH10
vvi-u.5	100265508	uncharacterized LOC100265508
vvi-u.5	100259554	uncharacterized LOC100259554
vvi-u.5	100257089	uncharacterized LOC100257089
ppo-u.5	18101707	uncharacterized LOC18101707
ppo-u.5	7491134	uncharacterized LOC7491134
ppo-u.5	18100205	uncharacterized LOC18100205
mtr-u.5	25484020	uncharacterized LOC25484020
mtr-u.5	11432594	E3 ubiquitin-protein ligase MARCHF8
ghi-r.1	107944690	uncharacterized LOC107944690
ghi-r.1	107944465	uncharacterized LOC107944465
ghi-r.1	107936132	uncharacterized LOC107936132
bna-r.1	125606989	probable E3 ubiquitin-protein ligase MARCHF10
bna-r.1	125609118	uncharacterized LOC125609118
cit-r.1	102628742	hypothetical protein
cit-r.1	102606695	uncharacterized LOC102606695
cit-r.1	102619257	uncharacterized LOC102619257
osa-u.5	4334905	uncharacterized LOC4334905
osa-u.5	4341836	uncharacterized LOC4341836
osa-u.5	4328407	uncharacterized LOC4328407
zma-u.5	100304255	RING/U-box superfamily protein
zma-u.5	100281740	protein binding protein
zma-u.5	103627315	RING/U-box superfamily protein
tae-r.2	123135359	uncharacterized LOC123135359
tae-r.2	123145033	uncharacterized LOC123145033
tae-r.2	123131555	uncharacterized LOC123131555
hvu-r.1	123424414	uncharacterized LOC123424414
hvu-r.1	123403931	uncharacterized LOC123403931
hvu-r.1	123409809	uncharacterized LOC123409809
sbi-r.1	8061609	uncharacterized LOC8061609
sbi-r.1	8056949	uncharacterized LOC8056949
sbi-r.1	8066464	uncharacterized LOC8066464
bdi-r.1	100829821	ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
bdi-r.1	100836924	uncharacterized LOC100836924
bdi-r.1	100839069	uncharacterized LOC100839069
cre-r.1	CHLRE_02g102600v5	uncharacterized protein

Top 50 coexpressed genes to 107828656 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107828656 (nta-r.1 coexpression data)

CoexMap"107828656"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0008270 [list] [network] zinc ion binding

(2210 genes)

IEA

Protein

XP_016511493.1 [sequence] [blastp]
XP_016511494.1 [sequence] [blastp]
XP_016511495.1 [sequence] [blastp]
XP_016511496.1 [sequence] [blastp]
XP_016511497.1 [sequence] [blastp]
XP_075113296.1 [sequence] [blastp]
XP_075113297.1 [sequence] [blastp]
XP_075113298.1 [sequence] [blastp]
XP_075113300.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 5, E.R. 2, nucl 1, E.R._vacu 1	(predict for XP_016511493.1)
plas 5, E.R. 2, nucl 1, E.R._vacu 1	(predict for XP_016511494.1)
plas 5, E.R. 2, nucl 1, E.R._vacu 1	(predict for XP_016511495.1)
plas 5, E.R. 2, nucl 1, E.R._vacu 1	(predict for XP_016511496.1)
plas 5, E.R. 2, nucl 1, E.R._vacu 1	(predict for XP_016511497.1)
plas 5, E.R. 2, nucl 1, E.R._vacu 1	(predict for XP_075113296.1)
plas 5, E.R. 2, nucl 1, E.R._vacu 1	(predict for XP_075113297.1)
plas 4, E.R. 2, cysk_plas 2, mito_plas 2, cyto_plas 2	(predict for XP_075113298.1)
plas 5, cyto_plas 3, E.R. 2, mito 1, extr 1, golg 1	(predict for XP_075113300.1)

Subcellular
localization
TargetP

other 7, chlo 3	(predict for XP_016511493.1)
other 7, chlo 3	(predict for XP_016511494.1)
other 7, chlo 3	(predict for XP_016511495.1)
other 7, chlo 3	(predict for XP_016511496.1)
other 7, chlo 3	(predict for XP_016511497.1)
other 7, chlo 3	(predict for XP_075113296.1)
other 7, chlo 3	(predict for XP_075113297.1)
other 7, chlo 3	(predict for XP_075113298.1)
other 6	(predict for XP_075113300.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107828656	nta-r.1 for 107785924	nta-r.1 for 107778310	nta-r.1 for 107791000	sly-u.5 for 101249383	sly-u.5 for 101256453	sly-u.5 for 101264251	sot-r.1 for 102596732	sot-r.1 for 102593861	sot-r.1 for 102578157	ath-u.5 for AT3G06330	ath-u.5 for AT3G09760	ath-u.5 for AT5G03180	gma-u.5 for 100798208	gma-u.5 for 100791140	gma-u.5 for 100811800	bra-r.6 for 103845473	bra-r.6 for 103849984	bra-r.6 for 108870098	vvi-u.5 for 100265508	vvi-u.5 for 100259554	vvi-u.5 for 100257089	ppo-u.5 for 18101707	ppo-u.5 for 7491134	ppo-u.5 for 18100205	mtr-u.5 for 25484020	mtr-u.5 for 11432594	ghi-r.1 for 107944690	ghi-r.1 for 107944465	ghi-r.1 for 107936132	bna-r.1 for 125606989	bna-r.1 for 125609118	cit-r.1 for 102628742	cit-r.1 for 102606695	cit-r.1 for 102619257	osa-u.5 for 4334905	osa-u.5 for 4341836	osa-u.5 for 4328407	zma-u.5 for 100304255	zma-u.5 for 100281740	zma-u.5 for 103627315	tae-r.2 for 123135359	tae-r.2 for 123145033	tae-r.2 for 123131555	hvu-r.1 for 123424414	hvu-r.1 for 123403931	hvu-r.1 for 123409809	sbi-r.1 for 8061609	sbi-r.1 for 8056949	sbi-r.1 for 8066464	bdi-r.1 for 100829821	bdi-r.1 for 100836924	bdi-r.1 for 100839069	cre-r.1 for CHLRE_02g102600v5

Ortholog

Ortholog ID: 514

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC107778310

uncharacterized LOC107776383

uncharacterized LOC107783518

uncharacterized LOC101249383

uncharacterized LOC101256453

uncharacterized LOC101265737

uncharacterized LOC102596732

uncharacterized LOC102593861

uncharacterized LOC102592492

RING/U-box superfamily protein

uncharacterized LOC100798208

E3 ubiquitin-protein ligase MARCHF11

uncharacterized LOC100782610

uncharacterized LOC103849984

uncharacterized LOC103870523

uncharacterized LOC100265508

uncharacterized LOC100257089

uncharacterized LOC100243829

uncharacterized LOC7491134

uncharacterized LOC7455873

uncharacterized LOC18102274

E3 ubiquitin-protein ligase MARCHF8

E3 ubiquitin-protein ligase MARCHF7

uncharacterized LOC11446862

uncharacterized LOC107944465

uncharacterized LOC107888472

uncharacterized LOC107905294

uncharacterized BNAC02G03310D

hypothetical protein

uncharacterized LOC102606695

uncharacterized LOC102619257

uncharacterized LOC4334905

uncharacterized LOC4341836

uncharacterized LOC9266525

RING/U-box superfamily protein

protein binding protein

RING/U-box superfamily protein

uncharacterized LOC123149080

uncharacterized LOC123167294

uncharacterized LOC123424414

uncharacterized LOC123403931

uncharacterized LOC123409809

uncharacterized LOC8061609

uncharacterized LOC8056949

uncharacterized LOC8066464

ferredoxin-thioredoxin reductase catalytic chain, chloroplastic

uncharacterized LOC100836924

uncharacterized LOC100839069

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00062	Fatty acid elongation	4
sly04626	Plant-pathogen interaction	4
sly04081	Hormone signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	4
gma01200	Carbon metabolism	4
gma00941	Flavonoid biosynthesis	3
gma04712	Circadian rhythm - plant	3
gma00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00330	Arginine and proline metabolism	3
vvi01200	Carbon metabolism	2
vvi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	6
ghi00260	Glycine, serine and threonine metabolism	4
ghi00460	Cyanoamino acid metabolism	4
ghi00630	Glyoxylate and dicarboxylate metabolism	4
ghi00670	One carbon pool by folate	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00904	Diterpenoid biosynthesis	2
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00562	Inositol phosphate metabolism	3
zma04070	Phosphatidylinositol signaling system	3
zma04136	Autophagy - other	2
zma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00053	Ascorbate and aldarate metabolism	3
tae00480	Glutathione metabolism	3
tae00330	Arginine and proline metabolism	3
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00230	Purine metabolism	4
tae00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04144	Endocytosis	3
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00561	Glycerolipid metabolism	2
sbi00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	3
bdi01200	Carbon metabolism	2
bdi01210	2-Oxocarboxylic acid metabolism	2
bdi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00280	Valine, leucine and isoleucine degradation	2
bdi01200	Carbon metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

107778310

107776383

107783518

101249383

101256453

101265737

102596732

102593861

102592492

819807

831897

836179

100798208

100783117

100782610

103849984

103870523

100265508

100257089

100243829

7491134

7455873

18102274

11432594

11407485

11446862

107944465

107888472

107905294

106360582

102628742

102606695

102619257

4334905

4341836

9266525

100304255

100281740

103627315

123149080

123167294

123424414

123403931

123409809

8061609

8056949

8066464

100829821

100836924

100839069

5725554

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	3	3	2	3	2	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107828656 (nta-r.1 coexpression data)

Top 50 enrichment test to 107828656 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**