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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107886482   probable pectate lyase 5 
 ghi-r.1   107939532   probable pectate lyase 13 
 ghi-r.1   107931171   putative pectate lyase 21 
 ghi-r.1   107928664   probable pectate lyase 5 
 ath-u.5   AT5G04310   Pectin lyase-like superfamily protein 
 ath-u.5   AT1G67750   Pectate lyase family protein 
 ath-u.5   AT1G04680   Pectin lyase-like superfamily protein 
 bra-r.6   103862557   probable pectate lyase 18 
 bra-r.6   103861505   probable pectate lyase 18 
 bra-r.6   103854567   probable pectate lyase 20 
 bna-r.1   106452978   probable pectate lyase 8 
 bna-r.1   106452444   probable pectate lyase 12 
 bna-r.1   106450598   probable pectate lyase 15 
 cit-r.1   102612467   probable pectate lyase 18 
 cit-r.1   102629596   probable pectate lyase 5 
 cit-r.1   102626426   probable pectate lyase 13 
 gma-u.5   100808438   probable pectate lyase 12 
 gma-u.5   100809277   probable pectate lyase 8 
 gma-u.5   100810380   pectate lyase 
 vvi-u.5   PEL   pectate lyase 
 vvi-u.5   PL1   probable pectate lyase 8 
 vvi-u.5   100242302   probable pectate lyase 5 
 ppo-u.5   7488611   probable pectate lyase 8 
 ppo-u.5   7460526   probable pectate lyase 8 
 mtr-u.5   25483116   probable pectate lyase 8 
 mtr-u.5   25499338   probable pectate lyase 12 
 mtr-u.5   11411484   probable pectate lyase 5 
 sly-u.5   101244298   probable pectate lyase 8 
 sly-u.5   PL   pectate lyase 
 sly-u.5   101254639   probable pectate lyase 8 
 sot-r.1   102593528   probable pectate lyase 12 
 sot-r.1   102605687   probable pectate lyase 8 
 nta-r.1   107802807   putative pectate lyase 8 
 nta-r.1   107811053   putative pectate lyase 8 
 nta-r.1   107814732   putative pectate lyase 18 
 osa-u.5   4335013   probable pectate lyase 8 
 osa-u.5   4348800   probable pectate lyase 12 
 zma-u.5   100273705   uncharacterized LOC100273705 
 zma-u.5   100281162   pectate lyase 8 
 zma-u.5   100281581   pectate lyase 12 
 tae-r.2   123180958   probable pectate lyase 5 
 tae-r.2   123119621   probable pectate lyase 5 
 tae-r.2   123051018   probable pectate lyase 8 
 hvu-r.1   123431519   probable pectate lyase 8 
 sbi-r.1   8080293   probable pectate lyase 8 
 sbi-r.1   8059278   probable pectate lyase 5 
 bdi-r.1   100834927   probable pectate lyase 5 
 bdi-r.1   100842200   probable pectate lyase 15 

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Top 50 coexpressed genes to 107886482 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107886482 (ghi-r.1 coexpression data)

CoexMap"107886482"


ghiLOC107886482 | Entrez gene ID : 107886482    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 3 3 3 2 3 3 2 3 2 3 3 1 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00040 [list] [network] Pentose and glucuronate interconversions (333 genes)
GO BP
GO CC
GO MF
GO:0030570 [list] [network] pectate lyase activity  (83 genes)  IEA  
Protein XP_016665943.2 [sequence] [blastp]
Subcellular
localization
wolf
extr 3,  vacu 3,  golg 1,  chlo 1,  cyto 1,  plas 1,  E.R. 1,  E.R._plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016665943.2)
Subcellular
localization
TargetP
scret 4  (predict for XP_016665943.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107886482
ghi-r.1
for
107939532
ghi-r.1
for
107931171
ghi-r.1
for
107928664
ath-u.5
for
AT5G04310
ath-u.5
for
AT1G67750
ath-u.5
for
AT1G04680
bra-r.6
for
103862557
bra-r.6
for
103861505
bra-r.6
for
103854567
bna-r.1
for
106452978
bna-r.1
for
106452444
bna-r.1
for
106450598
cit-r.1
for
102612467
cit-r.1
for
102629596
cit-r.1
for
102626426
gma-u.5
for
100808438
gma-u.5
for
100809277
gma-u.5
for
100810380
vvi-u.5
for
PEL
vvi-u.5
for
PL1
vvi-u.5
for
100242302
ppo-u.5
for
7488611
ppo-u.5
for
7460526
mtr-u.5
for
25483116
mtr-u.5
for
25499338
mtr-u.5
for
11411484
sly-u.5
for
101244298
sly-u.5
for
PL
sly-u.5
for
101254639
sot-r.1
for
102593528
sot-r.1
for
102605687
nta-r.1
for
107802807
nta-r.1
for
107811053
nta-r.1
for
107814732
osa-u.5
for
4335013
osa-u.5
for
4348800
zma-u.5
for
100273705
zma-u.5
for
100281162
zma-u.5
for
100281581
tae-r.2
for
123180958
tae-r.2
for
123119621
tae-r.2
for
123051018
hvu-r.1
for
123431519
sbi-r.1
for
8080293
sbi-r.1
for
8059278
bdi-r.1
for
100834927
bdi-r.1
for
100842200


Ortholog ID: 143
Species ghi ghi ghi ath ath bra bra bra bna bna bna cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu sbi sbi bdi bdi
Symbol LOC107924508 LOC107903759 LOC121206274 AT1G04680 AT3G24670 LOC103861505 LOC103834896 LOC103837461 LOC111207429 LOC106352403 LOC106427406 LOC102619978 LOC102609426 LOC102622327 LOC100782388 LOC100781845 LOC100789303 LOC100243265 LOC100246124 LOC100267540 LOC7458080 LOC18095377 LOC7483648 LOC25483116 LOC11411484 LOC11426383 PL LOC101264933 LOC778293 LOC102587929 LOC102586644 LOC102592779 LOC107828480 LOC107823132 LOC107778084 LOC4335013 LOC4348800 LOC100273705 LOC100281162 LOC100281581 LOC123119621 LOC123051018 LOC123186967 LOC123431519 LOC8080293 LOC8059278 LOC100834927 LOC100842200
Function* probable pectate lyase 8 probable pectate lyase 1 probable pectate lyase 1 Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein probable pectate lyase 18 probable pectate lyase 18 probable pectate lyase 22 putative pectate lyase 11 putative pectate lyase 11 probable pectate lyase 18 probable pectate lyase 22 probable pectate lyase 1 pectate lyase-like probable pectate lyase 5 probable pectate lyase 8 probable pectate lyase 12 probable pectate lyase 5 probable pectate lyase 12-like pectate lyase-like protein 3 probable pectate lyase 18 pectate lyase probable pectate lyase 22 probable pectate lyase 8 probable pectate lyase 5 probable pectate lyase 22 pectate lyase probable pectate lyase 5 probable pectate lyase P18 probable pectate lyase 8 probable pectate lyase P18 probable pectate lyase 13 putative pectate lyase 18 putative pectate lyase 8 putative pectate lyase 13 probable pectate lyase 8 probable pectate lyase 12 uncharacterized LOC100273705 pectate lyase 8 pectate lyase 12 probable pectate lyase 5 probable pectate lyase 8 probable pectate lyase 8 probable pectate lyase 8 probable pectate lyase 8 probable pectate lyase 5 probable pectate lyase 5 probable pectate lyase 15
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 4
ghi00040 Pentose and glucuronate interconversions 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00040 Pentose and glucuronate interconversions 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00040 Pentose and glucuronate interconversions 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 3
gma00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
gma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
vvi04145 Phagosome 2
vvi04517 IgSF CAM signaling 2
vvi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00040 Pentose and glucuronate interconversions 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00040 Pentose and glucuronate interconversions 3
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00040 Pentose and glucuronate interconversions 4
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03083 Polycomb repressive complex 2
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
sot00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 4
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 3
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 3
tae00600 Sphingolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107924508 107903759 121206274 839452 822063 103861505 103834896 103837461 111207429 106352403 106427406 102619978 102609426 102622327 100782388 100781845 100789303 100243265 100246124 100267540 7458080 18095377 7483648 25483116 11411484 11426383 101254471 101264933 778293 102587929 102586644 102592779 107828480 107823132 107778084 4335013 4348800 100273705 100281162 100281581 123119621 123051018 123186967 123431519 8080293 8059278 100834927 100842200
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