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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107886975   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 ath-u.5   HDR   4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
 gma-u.5   100818067   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 gma-u.5   100805941   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 vvi-u.5   100267479   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 ppo-u.5   7456396   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 ppo-u.5   7461194   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 mtr-u.5   25492711   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 mtr-u.5   25492714   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 
 sly-u.5   HDR   4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
 osa-u.5   4334003   4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like 
 zma-u.5   lw1   lemon white1 

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Top 50 coexpressed genes to 107886975 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107886975 (ghi-r.1 coexpression data)

CoexMap"107886975"


ghiLOC107886975 | Entrez gene ID : 107886975    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 1 2 1 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00900 [list] [network] Terpenoid backbone biosynthesis (143 genes)
GO BP
GO:0050992 [list] [network] dimethylallyl diphosphate biosynthetic process  (6 genes)  IEA  
GO:0019288 [list] [network] isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway  (12 genes)  IEA  
GO CC
GO MF
GO:0051745 [list] [network] 4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity  (6 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (4664 genes)  IEA  
Protein XP_016666579.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 2,  mito 2,  cyto_nucl 1  (predict for XP_016666579.2)
Subcellular
localization
TargetP
chlo 7,  mito 4  (predict for XP_016666579.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107886975
ath-u.5
for
HDR
gma-u.5
for
100818067
gma-u.5
for
100805941
vvi-u.5
for
100267479
ppo-u.5
for
7456396
ppo-u.5
for
7461194
mtr-u.5
for
25492711
mtr-u.5
for
25492714
sly-u.5
for
HDR
osa-u.5
for
4334003
zma-u.5
for
lw1


Ortholog ID: 6062
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC121214829 LOC107886975 HDR LOC103834423 LOC103838937 LOC106401636 LOC106434468 LOC102610997 LOC100805941 LOC100818067 LOC100267479 LOC7461194 LOC25492711 LOC25492714 HDR LOC102592556 LOC107760258 LOC107765472 LOC4334003 lw1 LOC123090995 LOC123086975 LOC123447676 LOC8059949 LOC100825558 CHLRE_08g372950v5
Function* 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like lemon white1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
ghi00906 Carotenoid biosynthesis 4
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00900 Terpenoid backbone biosynthesis 2
bra00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 8
gma00270 Cysteine and methionine metabolism 4
gma01200 Carbon metabolism 3
gma01230 Biosynthesis of amino acids 3
gma00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 6
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04146 Peroxisome 3
vvi01200 Carbon metabolism 2
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 5
mtr00906 Carotenoid biosynthesis 4
mtr00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 6
mtr00906 Carotenoid biosynthesis 4
mtr00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 3
sot00900 Terpenoid backbone biosynthesis 3
sot00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 9
nta00061 Fatty acid biosynthesis 2
nta00071 Fatty acid degradation 2
nta01212 Fatty acid metabolism 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 4
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 14
tae03420 Nucleotide excision repair 2
tae04120 Ubiquitin mediated proteolysis 2
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 3
hvu04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 4
cre00900 Terpenoid backbone biosynthesis 2
cre00340 Histidine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121214829 107886975 829585 103834423 103838937 106401636 106434468 102610997 100805941 100818067 100267479 7461194 25492711 25492714 100316901 102592556 107760258 107765472 4334003 100383164 123090995 123086975 123447676 8059949 100825558 5726875
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