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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107950290   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 ath-u.5   RIBA3   monofunctional riboflavin biosynthesis protein RIBA 3 
 bra-r.6   103851554   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 bna-r.1   106441124   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 bna-r.1   106385473   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 cit-r.1   102620026   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 gma-u.5   100786573   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 vvi-u.5   100267389   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 ppo-u.5   7465134   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 mtr-u.5   11412806   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 sly-u.5   101263281   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 sot-r.1   102586687   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 nta-r.1   107792734   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic-like 
 nta-r.1   107831087   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 osa-u.5   4339017   probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 zma-u.5   100282823   riboflavin biosynthesis protein ribAB 
 tae-r.2   123182268   probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 tae-r.2   123136061   probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 tae-r.2   123059115   probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 hvu-r.1   123445402   probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 sbi-r.1   8072551   probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 bdi-r.1   100839815   probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 

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Top 50 coexpressed genes to 107950290 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107950290 (ghi-r.1 coexpression data)

CoexMap"107887532"


ghiLOC107887532 | Entrez gene ID : 107887532    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 1 1 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00740 [list] [network] Riboflavin metabolism (45 genes)
ghi00790 [list] [network] Folate biosynthesis (57 genes)
ghi01240 [list] [network] Biosynthesis of cofactors (583 genes)
GO BP
GO:0009231 [list] [network] riboflavin biosynthetic process  (20 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO MF
GO:0003935 [list] [network] GTP cyclohydrolase II activity  (6 genes)  IEA  
GO:0008686 [list] [network] 3,4-dihydroxy-2-butanone-4-phosphate synthase activity  (6 genes)  IEA  
Protein XP_040963226.1 [sequence] [blastp]
XP_040963231.1 [sequence] [blastp]
XP_040963237.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  plas 1  (predict for XP_040963226.1)
cyto 4,  chlo 4,  cyto_nucl 3,  nucl 1,  mito 1,  plas 1,  mito_plas 1  (predict for XP_040963231.1)
cyto 4,  E.R. 2,  cyto_plas 2,  E.R._vacu 2,  plas 1  (predict for XP_040963237.1)
Subcellular
localization
TargetP
chlo 4,  other 4  (predict for XP_040963226.1)
chlo 4,  other 4  (predict for XP_040963231.1)
other 8  (predict for XP_040963237.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107950290
ath-u.5
for
RIBA3
bra-r.6
for
103851554
bna-r.1
for
106441124
bna-r.1
for
106385473
cit-r.1
for
102620026
gma-u.5
for
100786573
vvi-u.5
for
100267389
ppo-u.5
for
7465134
mtr-u.5
for
11412806
sly-u.5
for
101263281
sot-r.1
for
102586687
nta-r.1
for
107792734
nta-r.1
for
107831087
osa-u.5
for
4339017
zma-u.5
for
100282823
tae-r.2
for
123182268
tae-r.2
for
123136061
tae-r.2
for
123059115
hvu-r.1
for
123445402
sbi-r.1
for
8072551
bdi-r.1
for
100839815


Ortholog ID: 11453
Species ghi ath bra bna bna cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC107950290 RIBA3 LOC103851554 LOC106441124 LOC106385473 LOC102620026 LOC100786573 LOC100267389 LOC7465134 LOC11412806 LOC101263281 LOC102586687 LOC107792734 LOC107831087 LOC4339017 LOC100282823 LOC123182268 LOC123136061 LOC123059115 LOC123445402 LOC8072551 LOC100839815
Function* monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3 monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic-like monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic riboflavin biosynthesis protein ribAB probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00260 Glycine, serine and threonine metabolism 2
ghi00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00260 Glycine, serine and threonine metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 7
bna00051 Fructose and mannose metabolism 3
bna00740 Riboflavin metabolism 2
bna00790 Folate biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
bna00040 Pentose and glucuronate interconversions 3
bna00740 Riboflavin metabolism 2
bna00790 Folate biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma00051 Fructose and mannose metabolism 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00195 Photosynthesis 4
sot00710 Carbon fixation by Calvin cycle 4
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 6
nta00030 Pentose phosphate pathway 6
nta00051 Fructose and mannose metabolism 6
nta00710 Carbon fixation by Calvin cycle 6
nta01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 6
nta00030 Pentose phosphate pathway 6
nta00051 Fructose and mannose metabolism 6
nta00710 Carbon fixation by Calvin cycle 6
nta01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00710 Carbon fixation by Calvin cycle 2
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00740 Riboflavin metabolism 3
tae00790 Folate biosynthesis 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 6
tae01200 Carbon metabolism 6
tae04146 Peroxisome 6
tae00740 Riboflavin metabolism 3
tae00790 Folate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 4
tae01200 Carbon metabolism 4
tae04146 Peroxisome 4
tae00740 Riboflavin metabolism 3
tae00790 Folate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00710 Carbon fixation by Calvin cycle 3
bdi01200 Carbon metabolism 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107950290 836096 103851554 106441124 106385473 102620026 100786573 100267389 7465134 11412806 101263281 102586687 107792734 107831087 4339017 100282823 123182268 123136061 123059115 123445402 8072551 100839815
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