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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107950290   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 ath-u.5   RIBA3   monofunctional riboflavin biosynthesis protein RIBA 3 
 gma-u.5   100786573   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 vvi-u.5   100267389   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 ppo-u.5   7465134   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 mtr-u.5   11412806   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 sly-u.5   101263281   monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 osa-u.5   4339017   probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic 
 zma-u.5   100282823   riboflavin biosynthesis protein ribAB 

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Top 50 coexpressed genes to 107950290 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107950290 (ghi-r.1 coexpression data)

CoexMap"107950290"


ghiLOC107950290 | Entrez gene ID : 107950290    
Species ghi ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00740 [list] [network] Riboflavin metabolism (45 genes)
ghi00790 [list] [network] Folate biosynthesis (57 genes)
ghi01240 [list] [network] Biosynthesis of cofactors (583 genes)
GO BP
GO:0009231 [list] [network] riboflavin biosynthetic process  (20 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO MF
GO:0003935 [list] [network] GTP cyclohydrolase II activity  (6 genes)  IEA  
GO:0008686 [list] [network] 3,4-dihydroxy-2-butanone-4-phosphate synthase activity  (6 genes)  IEA  
Protein XP_016740589.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  cyto_nucl 3,  nucl 1,  chlo_mito 1  (predict for XP_016740589.1)
Subcellular
localization
TargetP
chlo 3,  other 3  (predict for XP_016740589.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107950290

.
ath-u.5
for
RIBA3

.
gma-u.5
for
100786573

.
vvi-u.5
for
100267389

.
ppo-u.5
for
7465134

.
mtr-u.5
for
11412806

.
sly-u.5
for
101263281

.
osa-u.5
for
4339017

.
zma-u.5
for
100282823

.


Ortholog ID: 11453
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi bna bna sbi sot cit bdi nta nta
Symbol RIBA3 LOC100786573 LOC101263281 LOC4339017 LOC100282823 LOC103851554 LOC100267389 LOC7465134 LOC11412806 LOC123136061 LOC123059115 LOC123445402 LOC107950290 LOC106385473 LOC106441124 LOC8072551 LOC102586687 LOC102620026 LOC100839815 LOC107831087 LOC107792734
Function* monofunctional riboflavin biosynthesis protein RIBA 3 monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic riboflavin biosynthesis protein ribAB monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma00051 Fructose and mannose metabolism 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00710 Carbon fixation by Calvin cycle 2
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00260 Glycine, serine and threonine metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 6
tae01200 Carbon metabolism 6
tae04146 Peroxisome 6
tae00740 Riboflavin metabolism 3
tae00790 Folate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 4
tae01200 Carbon metabolism 4
tae04146 Peroxisome 4
tae00740 Riboflavin metabolism 3
tae00790 Folate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00260 Glycine, serine and threonine metabolism 2
ghi00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
bna00040 Pentose and glucuronate interconversions 3
bna00740 Riboflavin metabolism 2
bna00790 Folate biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 7
bna00051 Fructose and mannose metabolism 3
bna00740 Riboflavin metabolism 2
bna00790 Folate biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00195 Photosynthesis 4
sot00710 Carbon fixation by Calvin cycle 4
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00710 Carbon fixation by Calvin cycle 3
bdi01200 Carbon metabolism 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 6
nta00030 Pentose phosphate pathway 6
nta00051 Fructose and mannose metabolism 6
nta00710 Carbon fixation by Calvin cycle 6
nta01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 6
nta00030 Pentose phosphate pathway 6
nta00051 Fructose and mannose metabolism 6
nta00710 Carbon fixation by Calvin cycle 6
nta01200 Carbon metabolism 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836096 100786573 101263281 4339017 100282823 103851554 100267389 7465134 11412806 123136061 123059115 123445402 107950290 106385473 106441124 8072551 102586687 102620026 100839815 107831087 107792734
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