ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107888435	trafficking protein particle complex subunit 5
ghi-r.1	107958927	trafficking protein particle complex subunit 5
ghi-r.1	107906910	trafficking protein particle complex subunit 5
ghi-r.1	107893425	trafficking protein particle complex subunit 5
ath-u.5	AT5G58030	Transport protein particle (TRAPP) component
bra-r.6	103856717	trafficking protein particle complex subunit 5
bra-r.6	103851667	trafficking protein particle complex subunit 5
bna-r.1	106443245	trafficking protein particle complex subunit 5
bna-r.1	125599154	trafficking protein particle complex subunit 5-like
bna-r.1	106388467	trafficking protein particle complex subunit 5-like
cit-r.1	102627257	uncharacterized LOC102627257
gma-u.5	100527008	putative TRAPP complex subunit trs31
gma-u.5	100500147	putative TRAPP complex subunit Trs31
vvi-u.5	100253512	uncharacterized LOC100253512
ppo-u.5	7485227	uncharacterized LOC7485227
ppo-u.5	7493406	uncharacterized LOC7493406
mtr-u.5	11410343	trafficking protein particle complex subunit 5
sly-u.5	101257356	uncharacterized LOC101257356
sot-r.1	102598175	trafficking protein particle complex subunit 5
nta-r.1	107817219	uncharacterized LOC107817219
nta-r.1	107765999	uncharacterized LOC107765999
osa-u.5	4327685	trafficking protein particle complex subunit 5
zma-u.5	100193854	uncharacterized LOC100193854
tae-r.2	123044692	trafficking protein particle complex subunit 5
tae-r.2	123087727	trafficking protein particle complex subunit 5
tae-r.2	123114212	trafficking protein particle complex subunit 5
hvu-r.1	123394973	trafficking protein particle complex subunit 5
sbi-r.1	8071356	trafficking protein particle complex subunit 5
sbi-r.1	8058958	trafficking protein particle complex subunit 5
bdi-r.1	100829847	trafficking protein particle complex subunit 5
cre-r.1	CHLRE_03g146467v5	uncharacterized protein

Top 50 coexpressed genes to 107888435 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107888435 (ghi-r.1 coexpression data)

CoexMap"107888435"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport

(272 genes)

IEA

GO CC

GO:1990070 [list] [network] TRAPPI protein complex	(7 genes)	IEA
GO:1990071 [list] [network] TRAPPII protein complex	(12 genes)	IEA
GO:1990072 [list] [network] TRAPPIII protein complex	(16 genes)	IEA

GO MF

Protein

XP_016668033.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, cyto_E.R. 4, mito 2, E.R. 1, cyto_mito 1, mito_plas 1

(predict for XP_016668033.1)

Subcellular
localization
TargetP

other 6, scret 3

(predict for XP_016668033.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107888435	ghi-r.1 for 107958927	ghi-r.1 for 107906910	ghi-r.1 for 107893425	ath-u.5 for AT5G58030	bra-r.6 for 103856717	bra-r.6 for 103851667	bna-r.1 for 106443245	bna-r.1 for 125599154	bna-r.1 for 106388467	cit-r.1 for 102627257	gma-u.5 for 100527008	gma-u.5 for 100500147	vvi-u.5 for 100253512	ppo-u.5 for 7485227	ppo-u.5 for 7493406	mtr-u.5 for 11410343	sly-u.5 for 101257356	sot-r.1 for 102598175	nta-r.1 for 107817219	nta-r.1 for 107765999	osa-u.5 for 4327685	zma-u.5 for 100193854	tae-r.2 for 123044692	tae-r.2 for 123087727	tae-r.2 for 123114212	hvu-r.1 for 123394973	sbi-r.1 for 8071356	sbi-r.1 for 8058958	bdi-r.1 for 100829847	cre-r.1 for CHLRE_03g146467v5

Ortholog

Ortholog ID: 6106

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

trafficking protein particle complex subunit 5

Transport protein particle (TRAPP) component

trafficking protein particle complex subunit 5

trafficking protein particle complex subunit 5-like

uncharacterized LOC102627257

putative TRAPP complex subunit trs31

putative TRAPP complex subunit Trs31

uncharacterized LOC100253512

uncharacterized LOC7485227

uncharacterized LOC7493406

trafficking protein particle complex subunit 5

uncharacterized LOC101257356

trafficking protein particle complex subunit 5

uncharacterized LOC107817219

uncharacterized LOC107765999

trafficking protein particle complex subunit 5

uncharacterized LOC100193854

trafficking protein particle complex subunit 5

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	5
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01240	Biosynthesis of cofactors	8
ghi00052	Galactose metabolism	7
ghi00500	Starch and sucrose metabolism	7
ghi00520	Amino sugar and nucleotide sugar metabolism	7
ghi01250	Biosynthesis of nucleotide sugars	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00040	Pentose and glucuronate interconversions	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03060	Protein export	2
ath00010	Glycolysis / Gluconeogenesis	2
ath01200	Carbon metabolism	2
ath01230	Biosynthesis of amino acids	2
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04130	SNARE interactions in vesicular transport	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	4
gma00513	Various types of N-glycan biosynthesis	4
gma04141	Protein processing in endoplasmic reticulum	4
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	5
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2
gma04141	Protein processing in endoplasmic reticulum	2
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	3
ppo03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	6
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	4
sly03060	Protein export	2
sly03420	Nucleotide excision repair	2
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4
nta03440	Homologous recombination	4
nta03018	RNA degradation	3
nta03040	Spliceosome	3
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	2
zma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00230	Purine metabolism	3
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	7
tae03050	Proteasome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00230	Purine metabolism	3
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae00250	Alanine, aspartate and glutamate metabolism	2
tae00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	10
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	5
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	3
cre04145	Phagosome	2
cre04148	Efferocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

107888435

107958927

107906910

835915

103856717

103851667

106443245

125599154

106387181

102627257

100527008

100500147

100253512

7485227

7493406

11410343

101257356

102598175

107817219

107765999

4327685

100193854

123044692

123087727

123188441

123394973

8071356

8058958

100829847

5721218

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	2	3	1	2	1	2	1	1	1	2	1	1	3	1	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107888435 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107888435 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**