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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107888494   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 ghi-r.1   107931339   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 ath-u.5   AT2G13440   glucose-inhibited division family A protein 
 bra-r.6   103860373   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 bna-r.1   106389406   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 bna-r.1   125607060   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-like 
 cit-r.1   102612697   uncharacterized LOC102612697 
 gma-u.5   100791841   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 gma-u.5   100782337   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 vvi-u.5   100243047   uncharacterized LOC100243047 
 ppo-u.5   18099044   uncharacterized LOC18099044 
 mtr-u.5   11427599   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 sly-u.5   101256323   uncharacterized LOC101256323 
 sot-r.1   102599251   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 nta-r.1   107781820   uncharacterized LOC107781820 
 nta-r.1   107830437   uncharacterized LOC107830437 
 osa-u.5   4325242   uncharacterized LOC4325242 
 zma-u.5   100383575   uncharacterized LOC100383575 
 tae-r.2   123080811   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 tae-r.2   123072625   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 tae-r.2   123063522   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 hvu-r.1   123445584   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 sbi-r.1   8074099   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 bdi-r.1   100821591   tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 
 cre-r.1   CHLRE_10g428678v5   uncharacterized protein 

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Top 50 coexpressed genes to 107888494 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107888494 (ghi-r.1 coexpression data)

CoexMap"107888494"


ghiLOC107888494 | Entrez gene ID : 107888494    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0002098 [list] [network] tRNA wobble uridine modification  (27 genes)  IEA  
GO:0030488 [list] [network] tRNA methylation  (58 genes)  IEA  
GO CC
GO MF
GO:0050660 [list] [network] flavin adenine dinucleotide binding  (367 genes)  IEA  
Protein XP_016668114.1 [sequence] [blastp]
XP_016668115.1 [sequence] [blastp]
XP_016668116.1 [sequence] [blastp]
XP_040933517.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 4,  cyto_mito 1  (predict for XP_016668114.1)
chlo 8,  chlo_mito 4,  cyto_mito 1  (predict for XP_016668115.1)
chlo 8,  chlo_mito 4,  cyto_mito 1  (predict for XP_016668116.1)
chlo 7,  chlo_mito 4,  mito 1,  cyto_mito 1  (predict for XP_040933517.1)
Subcellular
localization
TargetP
mito 6,  chlo 5  (predict for XP_016668114.1)
mito 6,  chlo 5  (predict for XP_016668115.1)
mito 6,  chlo 5  (predict for XP_016668116.1)
mito 6,  chlo 5  (predict for XP_040933517.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107888494
ghi-r.1
for
107931339
ath-u.5
for
AT2G13440
bra-r.6
for
103860373
bna-r.1
for
106389406
bna-r.1
for
125607060
cit-r.1
for
102612697
gma-u.5
for
100791841
gma-u.5
for
100782337
vvi-u.5
for
100243047
ppo-u.5
for
18099044
mtr-u.5
for
11427599
sly-u.5
for
101256323
sot-r.1
for
102599251
nta-r.1
for
107781820
nta-r.1
for
107830437
osa-u.5
for
4325242
zma-u.5
for
100383575
tae-r.2
for
123080811
tae-r.2
for
123072625
tae-r.2
for
123063522
hvu-r.1
for
123445584
sbi-r.1
for
8074099
bdi-r.1
for
100821591
cre-r.1
for
CHLRE_10g428678v5


Ortholog ID: 9978
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107888494 LOC107931339 AT2G13440 LOC103860373 LOC106389406 LOC125607060 LOC102612697 LOC100791841 LOC100782337 LOC100243047 LOC18099044 LOC11427599 LOC101256323 LOC102599251 LOC107781820 LOC107830437 LOC4325242 LOC100383575 LOC123080811 LOC123072625 LOC123063522 LOC123445584 LOC8074099 LOC100821591 CHLRE_10g428678v5
Function* tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG glucose-inhibited division family A protein tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-like uncharacterized LOC102612697 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG uncharacterized LOC100243047 uncharacterized LOC18099044 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG uncharacterized LOC101256323 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG uncharacterized LOC107781820 uncharacterized LOC107830437 uncharacterized LOC4325242 uncharacterized LOC100383575 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
ath00290 Valine, leucine and isoleucine biosynthesis 2
ath00620 Pyruvate metabolism 2
ath01210 2-Oxocarboxylic acid metabolism 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 8
gma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 2
sly00230 Purine metabolism 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 6
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107888494 107931339 815830 103860373 106389406 125607060 102612697 100791841 100782337 100243047 18099044 11427599 101256323 102599251 107781820 107830437 4325242 100383575 123080811 123072625 123063522 123445584 8074099 100821591 5728133
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