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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107888985   probable ribose-5-phosphate isomerase 3, chloroplastic 
 ath-u.5   EMB3119   Ribose 5-phosphate isomerase, type A protein 
 gma-u.5   100792666   probable ribose-5-phosphate isomerase 
 gma-u.5   100781866   probable ribose-5-phosphate isomerase 3, chloroplastic 
 vvi-u.5   100264080   probable ribose-5-phosphate isomerase 3, chloroplastic 
 ppo-u.5   18098956   probable ribose-5-phosphate isomerase 3, chloroplastic 
 ppo-u.5   7487664   probable ribose-5-phosphate isomerase 3, chloroplastic 
 mtr-u.5   11421390   probable ribose-5-phosphate isomerase 3, chloroplastic 
 sly-u.5   101264255   probable ribose-5-phosphate isomerase 3, chloroplastic 
 osa-u.5   4342543   probable ribose-5-phosphate isomerase 3, chloroplastic 
 zma-u.5   100284771   uncharacterized LOC100284771 

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Top 50 coexpressed genes to 107888985 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107888985 (ghi-r.1 coexpression data)

CoexMap"107888985"


ghiLOC107888985 | Entrez gene ID : 107888985    
Species ghi ath gma vvi ppo mtr sly osa zma cre cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00030 [list] [network] Pentose phosphate pathway (139 genes)
ghi00710 [list] [network] Carbon fixation by Calvin cycle (194 genes)
ghi01200 [list] [network] Carbon metabolism (681 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0009052 [list] [network] pentose-phosphate shunt, non-oxidative branch  (24 genes)  IEA  
GO CC
GO MF
GO:0004751 [list] [network] ribose-5-phosphate isomerase activity  (12 genes)  IEA  
Protein XP_016668755.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 3  (predict for XP_016668755.2)
Subcellular
localization
TargetP
chlo 7  (predict for XP_016668755.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107888985

.
ath-u.5
for
EMB3119

.
gma-u.5
for
100792666

.
gma-u.5
for
100781866

.
vvi-u.5
for
100264080

.
ppo-u.5
for
18098956

.
ppo-u.5
for
7487664

.
mtr-u.5
for
11421390

.
sly-u.5
for
101264255

.
osa-u.5
for
4342543

.
zma-u.5
for
100284771

.


Ortholog ID: 6854
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol EMB3119 LOC100781866 LOC100792666 LOC101264255 LOC4342543 LOC100284771 LOC103850028 LOC103849145 LOC100264080 LOC18098956 LOC7487664 LOC11421390 LOC123135816 LOC123188559 LOC123403017 LOC107898141 LOC107926830 LOC106427415 LOC106453084 CHLRE_03g187450v5 LOC110432544 LOC102588569 LOC102630826 LOC100840549 LOC107781865 LOC107775978
Function* Ribose 5-phosphate isomerase, type A protein probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic uncharacterized LOC100284771 probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic uncharacterized protein probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic probable ribose-5-phosphate isomerase 3, chloroplastic putative ribose-5-phosphate isomerase 3, chloroplastic putative ribose-5-phosphate isomerase 3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 7
ath01230 Biosynthesis of amino acids 5
ath00010 Glycolysis / Gluconeogenesis 4
ath00630 Glyoxylate and dicarboxylate metabolism 4
ath00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma03010 Ribosome 3
gma00900 Terpenoid backbone biosynthesis 2
gma00030 Pentose phosphate pathway 2
gma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
gma00030 Pentose phosphate pathway 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
sly04626 Plant-pathogen interaction 2
sly00710 Carbon fixation by Calvin cycle 2
sly01200 Carbon metabolism 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 9
osa00710 Carbon fixation by Calvin cycle 7
osa01230 Biosynthesis of amino acids 6
osa00630 Glyoxylate and dicarboxylate metabolism 5
osa00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 9
zma01230 Biosynthesis of amino acids 7
zma00710 Carbon fixation by Calvin cycle 7
zma00010 Glycolysis / Gluconeogenesis 4
zma00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 7
bra00030 Pentose phosphate pathway 5
bra01230 Biosynthesis of amino acids 5
bra00710 Carbon fixation by Calvin cycle 4
bra00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 8
bra01230 Biosynthesis of amino acids 8
bra00710 Carbon fixation by Calvin cycle 7
bra00010 Glycolysis / Gluconeogenesis 4
bra00030 Pentose phosphate pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 8
ppo00710 Carbon fixation by Calvin cycle 7
ppo01230 Biosynthesis of amino acids 7
ppo00010 Glycolysis / Gluconeogenesis 4
ppo00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 8
ppo00710 Carbon fixation by Calvin cycle 6
ppo01230 Biosynthesis of amino acids 6
ppo00030 Pentose phosphate pathway 4
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 4
mtr01200 Carbon metabolism 3
mtr03010 Ribosome 3
mtr00900 Terpenoid backbone biosynthesis 2
mtr00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 8
tae01200 Carbon metabolism 8
tae01230 Biosynthesis of amino acids 8
tae00030 Pentose phosphate pathway 5
tae00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 5
tae01200 Carbon metabolism 5
tae01230 Biosynthesis of amino acids 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
hvu01200 Carbon metabolism 4
hvu00630 Glyoxylate and dicarboxylate metabolism 3
hvu00785 Lipoic acid metabolism 3
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 6
ghi00030 Pentose phosphate pathway 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi01230 Biosynthesis of amino acids 4
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00030 Pentose phosphate pathway 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi01230 Biosynthesis of amino acids 4
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
bna01200 Carbon metabolism 5
bna00030 Pentose phosphate pathway 4
bna00710 Carbon fixation by Calvin cycle 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00030 Pentose phosphate pathway 4
bna00710 Carbon fixation by Calvin cycle 4
bna01200 Carbon metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 5
cre01200 Carbon metabolism 5
cre00500 Starch and sucrose metabolism 3
cre00030 Pentose phosphate pathway 3
cre00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 14
sbi00785 Lipoic acid metabolism 7
sbi00030 Pentose phosphate pathway 6
sbi01230 Biosynthesis of amino acids 6
sbi00010 Glycolysis / Gluconeogenesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot00710 Carbon fixation by Calvin cycle 4
sot01200 Carbon metabolism 4
sot01230 Biosynthesis of amino acids 4
sot00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 4
cit00710 Carbon fixation by Calvin cycle 3
cit01230 Biosynthesis of amino acids 3
cit00030 Pentose phosphate pathway 2
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi00710 Carbon fixation by Calvin cycle 3
bdi01230 Biosynthesis of amino acids 3
bdi00190 Oxidative phosphorylation 2
bdi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 4
nta00030 Pentose phosphate pathway 3
nta00710 Carbon fixation by Calvin cycle 3
nta01200 Carbon metabolism 3
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 4
nta00030 Pentose phosphate pathway 3
nta00710 Carbon fixation by Calvin cycle 3
nta01200 Carbon metabolism 3
nta00010 Glycolysis / Gluconeogenesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819639 100781866 100792666 101264255 4342543 100284771 103850028 103849145 100264080 18098956 7487664 11421390 123135816 123188559 123403017 107898141 107926830 106427415 106453084 5717475 110432544 102588569 102630826 100840549 107781865 107775978
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