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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107893602   WD repeat-containing protein 48 
 ghi-r.1   107893215   WD repeat-containing protein 48 
 ghi-r.1   107920282   WD repeat-containing protein 48 
 ghi-r.1   107920261   WD repeat-containing protein 48 
 ath-u.5   LRS1   Transducin/WD40 repeat-like superfamily protein 
 bra-r.6   103859075   WD repeat-containing protein 48 
 bna-r.1   106453063   WD repeat-containing protein 48 
 bna-r.1   106388828   WD repeat-containing protein 48 
 bna-r.1   106453019   WD repeat-containing protein 48 
 cit-r.1   102621542   uncharacterized LOC102621542 
 gma-u.5   100792334   WD repeat-containing protein 48 
 gma-u.5   100791786   WD repeat-containing protein 48 
 gma-u.5   100788971   WD repeat-containing protein 48 
 vvi-u.5   100248769   uncharacterized LOC100248769 
 ppo-u.5   18098902   uncharacterized LOC18098902 
 ppo-u.5   18110960   uncharacterized LOC18110960 
 mtr-u.5   11433323   WD repeat-containing protein 48 
 mtr-u.5   25484665   WD repeat-containing protein 48 
 sly-u.5   101249305   WD repeat-containing protein 
 sly-u.5   101244688   uncharacterized LOC101244688 
 sot-r.1   102578423   WD repeat-containing protein 48 
 sot-r.1   102603653   WD repeat-containing protein 48-like 
 nta-r.1   107776162   uncharacterized LOC107776162 
 nta-r.1   107831097   uncharacterized LOC107831097 
 nta-r.1   107799253   uncharacterized LOC107799253 
 osa-u.5   4351590   uncharacterized LOC4351590 
 zma-u.5   103640814   WD repeat-containing protein 48 
 zma-u.5   103650664   WD repeat-containing protein 48 
 tae-r.2   123102940   WD repeat-containing protein 48 
 tae-r.2   123111101   WD repeat-containing protein 48 
 tae-r.2   123120095   WD repeat-containing protein 48 
 hvu-r.1   123399179   WD repeat-containing protein 48 
 sbi-r.1   110429704   WD repeat-containing protein 48 
 bdi-r.1   100833130   WD repeat-containing protein 48 
 cre-r.1   CHLRE_13g583250v5   uncharacterized protein 

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Top 50 coexpressed genes to 107893602 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107893602 (ghi-r.1 coexpression data)

CoexMap"107893602"


ghiLOC107893602 | Entrez gene ID : 107893602    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 3 1 3 1 2 2 2 2 3 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03460 [list] [network] Fanconi anemia pathway (91 genes)
GO BP
GO:0015074 [list] [network] DNA integration  (103 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (150 genes)  IEA  
GO CC
GO MF
GO:0043130 [list] [network] ubiquitin binding  (169 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (9083 genes)  IEA  
Protein XP_016674123.1 [sequence] [blastp]
XP_016674124.1 [sequence] [blastp]
XP_016674125.1 [sequence] [blastp]
XP_016674126.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  mito 2,  cyto_nucl 2,  chlo_mito 2,  nucl_plas 2  (predict for XP_016674123.1)
nucl 4,  chlo 2,  mito 2,  cyto_nucl 2,  chlo_mito 2,  nucl_plas 2  (predict for XP_016674124.1)
nucl 4,  chlo 2,  mito 2,  cyto_nucl 2,  chlo_mito 2,  nucl_plas 2  (predict for XP_016674125.1)
nucl 4,  chlo 2,  mito 2,  cyto_nucl 2,  chlo_mito 2,  nucl_plas 2  (predict for XP_016674126.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016674123.1)
other 7  (predict for XP_016674124.1)
other 7  (predict for XP_016674125.1)
other 7  (predict for XP_016674126.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107893602
ghi-r.1
for
107893215
ghi-r.1
for
107920282
ghi-r.1
for
107920261
ath-u.5
for
LRS1
bra-r.6
for
103859075
bna-r.1
for
106453063
bna-r.1
for
106388828
bna-r.1
for
106453019
cit-r.1
for
102621542
gma-u.5
for
100792334
gma-u.5
for
100791786
gma-u.5
for
100788971
vvi-u.5
for
100248769
ppo-u.5
for
18098902
ppo-u.5
for
18110960
mtr-u.5
for
11433323
mtr-u.5
for
25484665
sly-u.5
for
101249305
sly-u.5
for
101244688
sot-r.1
for
102578423
sot-r.1
for
102603653
nta-r.1
for
107776162
nta-r.1
for
107831097
nta-r.1
for
107799253
osa-u.5
for
4351590
zma-u.5
for
103640814
zma-u.5
for
103650664
tae-r.2
for
123102940
tae-r.2
for
123111101
tae-r.2
for
123120095
hvu-r.1
for
123399179
sbi-r.1
for
110429704
bdi-r.1
for
100833130
cre-r.1
for
CHLRE_13g583250v5


Ortholog ID: 4373
Species ghi ghi ghi ath bra bna bna bna cit gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107893602 LOC107920261 LOC107899144 LRS1 LOC103859075 LOC106453063 LOC106388828 LOC106453019 LOC102621542 LOC100792334 LOC100775985 LOC100248769 LOC18098902 LOC18110960 LOC11433323 LOC25484665 LOC101249305 LOC101244688 LOC102578423 LOC102603653 LOC107776162 LOC107831097 LOC107799253 LOC4351590 LOC103640814 LOC103650664 LOC123102940 LOC123111101 LOC123120095 LOC123399179 LOC110429704 LOC100833130 CHLRE_13g583250v5
Function* WD repeat-containing protein 48 WD repeat-containing protein 48 WD repeat-containing protein 48 Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein 48 WD repeat-containing protein 48 WD repeat-containing protein 48 WD repeat-containing protein 48 uncharacterized LOC102621542 WD repeat-containing protein 48 WD repeat-containing protein 48 uncharacterized LOC100248769 uncharacterized LOC18098902 uncharacterized LOC18110960 WD repeat-containing protein 48 WD repeat-containing protein 48 WD repeat-containing protein uncharacterized LOC101244688 WD repeat-containing protein 48 WD repeat-containing protein 48-like uncharacterized LOC107776162 uncharacterized LOC107831097 uncharacterized LOC107799253 uncharacterized LOC4351590 WD repeat-containing protein 48 WD repeat-containing protein 48 WD repeat-containing protein 48 WD repeat-containing protein 48 WD repeat-containing protein 48 WD repeat-containing protein 48 WD repeat-containing protein 48 WD repeat-containing protein 48 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 8
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04136 Autophagy - other 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 8
ghi00790 Folate biosynthesis 2
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 8
ghi00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath03015 mRNA surveillance pathway 2
ath04382 Cornified envelope formation 2
ath04016 MAPK signaling pathway - plant 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 4
bra00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 4
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00020 Citrate cycle (TCA cycle) 2
ppo00620 Pyruvate metabolism 2
ppo00785 Lipoic acid metabolism 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03083 Polycomb repressive complex 3
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta04075 Plant hormone signal transduction 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta04075 Plant hormone signal transduction 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 3
osa00562 Inositol phosphate metabolism 2
osa04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma03250 Viral life cycle - HIV-1 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 5
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae04382 Cornified envelope formation 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 2
cre00410 beta-Alanine metabolism 2
cre00770 Pantothenate and CoA biosynthesis 2
cre00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107893602 107920261 107899144 819671 103859075 106453063 106388828 106453019 102621542 100792334 100775985 100248769 18098902 18110960 11433323 25484665 101249305 101244688 102578423 102603653 107776162 107831097 107799253 4351590 103640814 103650664 123102940 123111101 123120095 123399179 110429704 100833130 5719354
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