ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107895183	nuclear transcription factor Y subunit B-2
ghi-r.1	107930670	nuclear transcription factor Y subunit B-1
ghi-r.1	121213841	nuclear transcription factor Y subunit B-3
ghi-r.1	121206172	nuclear transcription factor Y subunit B-3
ath-u.5	NF-YB2	nuclear factor Y, subunit B2
ath-u.5	NF-YB8	nuclear factor Y, subunit B8
ath-u.5	NF-YB1	nuclear factor Y, subunit B1
bra-r.6	103869864	nuclear transcription factor Y subunit B-3
bra-r.6	103867074	nuclear transcription factor Y subunit B-1
bra-r.6	103865575	nuclear transcription factor Y subunit B-8
bna-r.1	125604727	nuclear transcription factor Y subunit B-3-like
bna-r.1	125578437	nuclear transcription factor Y subunit B-10-like
cit-r.1	102624322	nuclear transcription factor Y subunit B-8
cit-r.1	102616254	nuclear transcription factor Y subunit B-3
cit-r.1	102609097	nuclear transcription factor Y subunit B-3
gma-u.5	100798667	nuclear transcription factor Y subunit B-10
gma-u.5	100500556	nuclear factor Y, subunit B3-like protein
gma-u.5	100820170	nuclear transcription factor Y subunit B-10
vvi-u.5	100854372	nuclear transcription factor Y subunit B-3
vvi-u.5	100251431	nuclear transcription factor Y subunit B-3
ppo-u.5	7458474	nuclear transcription factor Y subunit B-3
ppo-u.5	7465295	nuclear transcription factor Y subunit B-10
ppo-u.5	7469329	nuclear transcription factor Y subunit B-3
mtr-u.5	11429747	nuclear transcription factor Y subunit B-1
mtr-u.5	25486265	nuclear transcription factor Y subunit B-3
mtr-u.5	25489147	nuclear transcription factor Y subunit B-3
sly-u.5	101251575	nuclear transcription factor Y subunit B-10-like
sly-u.5	101258170	nuclear transcription factor Y subunit B-3
sly-u.5	101257257	nuclear transcription factor Y subunit B-10
sot-r.1	102579916	nuclear transcription factor Y subunit B-10-like
sot-r.1	102577473	transcription factor NF-Y CCAAT-binding-like protein-like
sot-r.1	102605129	nuclear transcription factor Y subunit B-1-like
nta-r.1	107828035	nuclear transcription factor Y subunit B-8
nta-r.1	107801440	nuclear transcription factor Y subunit B-3
nta-r.1	107797954	nuclear transcription factor Y subunit B-10
osa-u.5	4333105	nuclear transcription factor Y subunit B-8-like
osa-u.5	4339676	nuclear transcription factor Y subunit B-4-like
osa-u.5	9268285	nuclear transcription factor Y subunit B-2-like
zma-u.5	100281247	uncharacterized LOC100281247
zma-u.5	100281337	uncharacterized LOC100281337
zma-u.5	100273424	CAAT box binding protein 1
tae-r.2	123079655	nuclear transcription factor Y subunit B-2
tae-r.2	123069141	nuclear transcription factor Y subunit B-4
tae-r.2	123062505	nuclear transcription factor Y subunit B-2
hvu-r.1	123451200	nuclear transcription factor Y subunit B-4-like
hvu-r.1	123444970	nuclear transcription factor Y subunit B-3-like
sbi-r.1	8069671	nuclear transcription factor Y subunit B-11
sbi-r.1	8070049	nuclear transcription factor Y subunit B-8
sbi-r.1	8057758	nuclear transcription factor Y subunit B-3
bdi-r.1	100831223	nuclear transcription factor Y subunit B-3
bdi-r.1	100831766	nuclear transcription factor Y subunit B-8
bdi-r.1	100833263	nuclear transcription factor Y subunit B
cre-r.1	CHLRE_02g079200v5	uncharacterized protein

Top 50 coexpressed genes to 107895183 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107895183 (ghi-r.1 coexpression data)

CoexMap"107895183"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(1121 genes)

IEA

GO CC

GO:0016602 [list] [network] CCAAT-binding factor complex	(61 genes)	IEA
GO:0005634 [list] [network] nucleus	(7681 genes)	IEA

GO MF

GO:0001228 [list] [network] DNA-binding transcription activator activity, RNA polymerase II-specific	(40 genes)	IEA
GO:0046982 [list] [network] protein heterodimerization activity	(254 genes)	IEA
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(605 genes)	IEA

Protein

XP_016675931.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, mito 4

(predict for XP_016675931.1)

Subcellular
localization
TargetP

other 8

(predict for XP_016675931.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107895183	ghi-r.1 for 107930670	ghi-r.1 for 121213841	ghi-r.1 for 121206172	ath-u.5 for NF-YB2	ath-u.5 for NF-YB8	ath-u.5 for NF-YB1	bra-r.6 for 103869864	bra-r.6 for 103867074	bra-r.6 for 103865575	bna-r.1 for 125604727	bna-r.1 for 125578437	cit-r.1 for 102624322	cit-r.1 for 102616254	cit-r.1 for 102609097	gma-u.5 for 100798667	gma-u.5 for 100500556	gma-u.5 for 100820170	vvi-u.5 for 100854372	vvi-u.5 for 100251431	ppo-u.5 for 7458474	ppo-u.5 for 7465295	ppo-u.5 for 7469329	mtr-u.5 for 11429747	mtr-u.5 for 25486265	mtr-u.5 for 25489147	sly-u.5 for 101251575	sly-u.5 for 101258170	sly-u.5 for 101257257	sot-r.1 for 102579916	sot-r.1 for 102577473	sot-r.1 for 102605129	nta-r.1 for 107828035	nta-r.1 for 107801440	nta-r.1 for 107797954	osa-u.5 for 4333105	osa-u.5 for 4339676	osa-u.5 for 9268285	zma-u.5 for 100281247	zma-u.5 for 100281337	zma-u.5 for 100273424	tae-r.2 for 123079655	tae-r.2 for 123069141	tae-r.2 for 123062505	hvu-r.1 for 123451200	hvu-r.1 for 123444970	sbi-r.1 for 8069671	sbi-r.1 for 8070049	sbi-r.1 for 8057758	bdi-r.1 for 100831223	bdi-r.1 for 100831766	bdi-r.1 for 100833263	cre-r.1 for CHLRE_02g079200v5

Ortholog

Ortholog ID: 350

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107930670

LOC107957333

LOC107954982

NF-YB8

NF-YB1

NF-YB10

Function^*

nuclear transcription factor Y subunit B-1