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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AAS   Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 
 ath-u.5   TYRDC   L-tyrosine decarboxylase 
 gma-u.5   100791074   tyrosine decarboxylase 2 
 gma-u.5   100787822   tyrosine decarboxylase 
 gma-u.5   100795274   tyrosine decarboxylase 
 vvi-u.5   100251450   phenylacetaldehyde synthase 
 ppo-u.5   7459533   phenylacetaldehyde synthase 
 mtr-u.5   11419480   phenylacetaldehyde synthase 
 mtr-u.5   25486294   tyrosine decarboxylase 1 
 mtr-u.5   25486293   tyrosine decarboxylase 1 
 sly-u.5   101263431   tryptophan decarboxylase TDC1-like 
 sly-u.5   101244707   tyrosine decarboxylase 2 
 osa-u.5   4343080   tyrosine decarboxylase 
 zma-u.5   100274380   Tyrosine decarboxylase 1 

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Top 50 coexpressed genes to AAS (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AAS (ath-u.5 coexpression data)

CoexMap"107895446"


ghiLOC107895446 | Entrez gene ID : 107895446    
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 2 3 1 1 3 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00350 [list] [network] Tyrosine metabolism (108 genes)
ghi00360 [list] [network] Phenylalanine metabolism (75 genes)
ghi00380 [list] [network] Tryptophan metabolism (147 genes)
ghi00901 [list] [network] Indole alkaloid biosynthesis (11 genes)
ghi00950 [list] [network] Isoquinoline alkaloid biosynthesis (56 genes)
ghi00965 [list] [network] Betalain biosynthesis (9 genes)
GO BP
GO:0006520 [list] [network] amino acid metabolic process  (883 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0016831 [list] [network] carboxy-lyase activity  (148 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (218 genes)  IEA  
Protein XP_016676213.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  plas 2,  E.R. 2,  E.R._plas 2  (predict for XP_016676213.2)
Subcellular
localization
TargetP
scret 4  (predict for XP_016676213.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AAS
ath-u.5
for
TYRDC
gma-u.5
for
100791074
gma-u.5
for
100787822
gma-u.5
for
100795274
vvi-u.5
for
100251450
ppo-u.5
for
7459533
mtr-u.5
for
11419480
mtr-u.5
for
25486294
mtr-u.5
for
25486293
sly-u.5
for
101263431
sly-u.5
for
101244707
osa-u.5
for
4343080
zma-u.5
for
100274380


Ortholog ID: 1051
Species ghi ghi ath ath bra bna cit cit gma gma ppo mtr mtr sly sot sot nta nta osa zma hvu sbi bdi cre
Symbol LOC107934214 LOC107953442 TYRDC AAS LOC103838003 LOC111206442 LOC102616375 LOC102609487 LOC100791074 LOC100787822 LOC18104108 LOC11423811 LOC11419480 LOC101244707 LOC102592302 LOC102580311 LOC107816983 LOC107821692 LOC4343080 LOC100274380 LOC123395782 LOC8057946 LOC100822828 CHLRE_01g028423v5
Function* tyrosine decarboxylase 1 tyrosine decarboxylase 1 L-tyrosine decarboxylase Pyridoxal phosphate (PLP)-dependent transferases superfamily protein tyrosine decarboxylase 1 tyrosine decarboxylase 2 tyrosine decarboxylase-like tyrosine decarboxylase 2 tyrosine decarboxylase 2 tyrosine decarboxylase tyrosine decarboxylase 1 tyrosine decarboxylase 1 phenylacetaldehyde synthase tyrosine decarboxylase 2 tyrosine decarboxylase 1-like tyrosine decarboxylase 1-like tyrosine decarboxylase 2 tyrosine decarboxylase 2 tyrosine decarboxylase Tyrosine decarboxylase 1 tryptophan decarboxylase 2 tyrosine decarboxylase 1 tyrosine decarboxylase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 6
ghi00350 Tyrosine metabolism 2
ghi00360 Phenylalanine metabolism 2
ghi00380 Tryptophan metabolism 2
ghi00901 Indole alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 6
ghi00350 Tyrosine metabolism 2
ghi00360 Phenylalanine metabolism 2
ghi00380 Tryptophan metabolism 2
ghi00901 Indole alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 3
bra00030 Pentose phosphate pathway 2
bra01200 Carbon metabolism 2
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00350 Tyrosine metabolism 2
bna00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00350 Tyrosine metabolism 2
cit00360 Phenylalanine metabolism 2
cit00380 Tryptophan metabolism 2
cit00901 Indole alkaloid biosynthesis 2
cit00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 3
gma04712 Circadian rhythm - plant 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00350 Tyrosine metabolism 4
gma00950 Isoquinoline alkaloid biosynthesis 4
gma00360 Phenylalanine metabolism 3
gma00380 Tryptophan metabolism 3
gma00901 Indole alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00350 Tyrosine metabolism 3
mtr00360 Phenylalanine metabolism 3
mtr00380 Tryptophan metabolism 3
mtr00901 Indole alkaloid biosynthesis 3
mtr00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 9
mtr00350 Tyrosine metabolism 5
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
mtr01200 Carbon metabolism 5
mtr00360 Phenylalanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00591 Linoleic acid metabolism 3
sot00592 alpha-Linolenic acid metabolism 3
sot00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta00380 Tryptophan metabolism 2
nta00901 Indole alkaloid biosynthesis 2
nta00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00052 Galactose metabolism 2
nta00500 Starch and sucrose metabolism 2
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00561 Glycerolipid metabolism 2
osa00566 Sulfoquinovose metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00402 Benzoxazinoid biosynthesis 2
zma00999 Biosynthesis of various plant secondary metabolites 2
zma00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107934214 107953442 828986 816553 103838003 111206442 102616375 102609487 100791074 100787822 18104108 11423811 11419480 101244707 102592302 102580311 107816983 107821692 4343080 100274380 123395782 8057946 100822828 5715327
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