ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107896259	3-oxo-5-alpha-steroid 4-dehydrogenase 2
ghi-r.1	107913695	3-oxo-5-alpha-steroid 4-dehydrogenase 1
ghi-r.1	107895912	very-long-chain enoyl-CoA reductase
ghi-r.1	121210144	very-long-chain enoyl-CoA reductase
ath-u.5	AT5G16010	3-oxo-5-alpha-steroid 4-dehydrogenase family protein
bra-r.6	103856176	very-long-chain enoyl-CoA reductase
bra-r.6	103851018	steroid 5-alpha-reductase DET2
bra-r.6	103846366	very-long-chain enoyl-CoA reductase
bna-r.1	106354472	steroid 5-alpha-reductase DET2
bna-r.1	106372195	very-long-chain enoyl-CoA reductase-like
bna-r.1	106402194	steroid 5-alpha-reductase DET2
cit-r.1	102617880	uncharacterized LOC102617880
gma-u.5	100797930	steroid 5-alpha-reductase DET2-like
gma-u.5	100798454	very-long-chain enoyl-CoA reductase
vvi-u.5	100252124	uncharacterized LOC100252124
vvi-u.5	100260916	uncharacterized LOC100260916
vvi-u.5	100259184	steroid 5-alpha-reductase DET2
ppo-u.5	7491592	steroid 5-alpha-reductase DET2
ppo-u.5	7469508	steroid 5-alpha-reductase DET2-like
mtr-u.5	25496145	3-oxo-5-alpha-steroid 4-dehydrogenase 2
mtr-u.5	25496142	steroid 5-alpha-reductase DET2
mtr-u.5	11440580	very-long-chain enoyl-CoA reductase
sly-u.5	101254751	uncharacterized LOC101254751
sly-u.5	101255051	uncharacterized LOC101255051
sly-u.5	101255353	uncharacterized LOC101255353
sot-r.1	102600822	very-long-chain enoyl-CoA reductase-like
sot-r.1	102599604	steroid 5-alpha-reductase DET2-like
sot-r.1	102599277	very-long-chain enoyl-CoA reductase-like
nta-r.1	107822323	uncharacterized LOC107822323
nta-r.1	107812573	uncharacterized LOC107812573
nta-r.1	107810464	uncharacterized LOC107810464
osa-u.5	4342458	uncharacterized LOC4342458
zma-u.5	103633692	very-long-chain enoyl-CoA reductase
zma-u.5	103649488	3-oxo-5-alpha-steroid 4-dehydrogenase 2
zma-u.5	100281302	uncharacterized LOC100281302
tae-r.2	123045043	3-oxo-5-alpha-steroid 4-dehydrogenase 1
tae-r.2	123051611	3-oxo-5-alpha-steroid 4-dehydrogenase 1
tae-r.2	123187543	3-oxo-5-alpha-steroid 4-dehydrogenase 1
hvu-r.1	123406191	3-oxo-5-alpha-steroid 4-dehydrogenase 1
sbi-r.1	8086434	very-long-chain enoyl-CoA reductase
bdi-r.1	100835261	3-oxo-5-alpha-steroid 4-dehydrogenase 1
bdi-r.1	100834375	3-oxo-5-alpha-steroid 4-dehydrogenase 2

Top 50 coexpressed genes to 107896259 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107896259 (ghi-r.1 coexpression data)

CoexMap"107896259"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006629 [list] [network] lipid metabolic process

(1962 genes)

IEA

GO CC

GO MF

GO:0016627 [list] [network] oxidoreductase activity, acting on the CH-CH group of donors

(160 genes)

IEA

Protein

XP_016676863.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, vacu 2, mito 1, extr 1, E.R. 1, golg 1

(predict for XP_016676863.1)

Subcellular
localization
TargetP

scret 7

(predict for XP_016676863.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107896259	ghi-r.1 for 107913695	ghi-r.1 for 107895912	ghi-r.1 for 121210144	ath-u.5 for AT5G16010	bra-r.6 for 103856176	bra-r.6 for 103851018	bra-r.6 for 103846366	bna-r.1 for 106354472	bna-r.1 for 106372195	bna-r.1 for 106402194	cit-r.1 for 102617880	gma-u.5 for 100797930	gma-u.5 for 100798454	vvi-u.5 for 100252124	vvi-u.5 for 100260916	vvi-u.5 for 100259184	ppo-u.5 for 7491592	ppo-u.5 for 7469508	mtr-u.5 for 25496145	mtr-u.5 for 25496142	mtr-u.5 for 11440580	sly-u.5 for 101254751	sly-u.5 for 101255051	sly-u.5 for 101255353	sot-r.1 for 102600822	sot-r.1 for 102599604	sot-r.1 for 102599277	nta-r.1 for 107822323	nta-r.1 for 107812573	nta-r.1 for 107810464	osa-u.5 for 4342458	zma-u.5 for 103633692	zma-u.5 for 103649488	zma-u.5 for 100281302	tae-r.2 for 123045043	tae-r.2 for 123051611	tae-r.2 for 123187543	hvu-r.1 for 123406191	sbi-r.1 for 8086434	bdi-r.1 for 100835261	bdi-r.1 for 100834375

Ortholog

Ortholog ID: 2934

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

3-oxo-5-alpha-steroid 4-dehydrogenase 2

very-long-chain enoyl-CoA reductase

3-oxo-5-alpha-steroid 4-dehydrogenase family protein

very-long-chain enoyl-CoA reductase

steroid 5-alpha-reductase DET2

very-long-chain enoyl-CoA reductase

steroid 5-alpha-reductase DET2

very-long-chain enoyl-CoA reductase-like

very-long-chain enoyl-CoA reductase

uncharacterized LOC102617880

steroid 5-alpha-reductase DET2-like

very-long-chain enoyl-CoA reductase

uncharacterized LOC100260916

steroid 5-alpha-reductase DET2

uncharacterized LOC100254065

steroid 5-alpha-reductase DET2

uncharacterized LOC7486861

3-oxo-5-alpha-steroid 4-dehydrogenase 2

steroid 5-alpha-reductase DET2

very-long-chain enoyl-CoA reductase

uncharacterized LOC101254751

uncharacterized LOC101255051

uncharacterized LOC101255353

very-long-chain enoyl-CoA reductase-like

steroid 5-alpha-reductase DET2-like

very-long-chain enoyl-CoA reductase-like

uncharacterized LOC107810464

uncharacterized LOC107808974

uncharacterized LOC107763464

uncharacterized LOC4342458

very-long-chain enoyl-CoA reductase

3-oxo-5-alpha-steroid 4-dehydrogenase 2

uncharacterized LOC100281302

3-oxo-5-alpha-steroid 4-dehydrogenase 1

very-long-chain enoyl-CoA reductase

3-oxo-5-alpha-steroid 4-dehydrogenase 1

3-oxo-5-alpha-steroid 4-dehydrogenase 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00260	Glycine, serine and threonine metabolism	4
ghi00630	Glyoxylate and dicarboxylate metabolism	4
ghi00670	One carbon pool by folate	4
ghi00785	Lipoic acid metabolism	4
ghi01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00460	Cyanoamino acid metabolism	2
ath00500	Starch and sucrose metabolism	2
ath00999	Biosynthesis of various plant secondary metabolites	2
ath00940	Phenylpropanoid biosynthesis	2
ath00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	3
bna00543	Exopolysaccharide biosynthesis	3
bna00920	Sulfur metabolism	3
bna01200	Carbon metabolism	3
bna01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	4
bna01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00902	Monoterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00073	Cutin, suberine and wax biosynthesis	4
ppo01212	Fatty acid metabolism	4
ppo00061	Fatty acid biosynthesis	3
ppo02010	ABC transporters	2
ppo00062	Fatty acid elongation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	7
mtr00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00260	Glycine, serine and threonine metabolism	4
sly00280	Valine, leucine and isoleucine degradation	3
sly01200	Carbon metabolism	3
sly00010	Glycolysis / Gluconeogenesis	3
sly00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00909	Sesquiterpenoid and triterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	2
zma00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	3
tae00073	Cutin, suberine and wax biosynthesis	3
tae04075	Plant hormone signal transduction	3
tae00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00710	Carbon fixation by Calvin cycle	2
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00195	Photosynthesis	4
bdi00710	Carbon fixation by Calvin cycle	2
bdi01200	Carbon metabolism	2
bdi00940	Phenylpropanoid biosynthesis	2
bdi00941	Flavonoid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

107896259

107895912

121210144

831458

103856176

103851018

103846366

106354472

106372195

106433151

102617880

100797930

100798454

100260916

100259184

100254065

7491592

7486861

25496145

25496142

11440580

101254751

101255051

101255353

102600822

102599604

102599277

107810464

107808974

107763464

4342458

103633692

103649488

100281302

123045043

123051611

123187543

123406191

8086434

100835261

100834375

The preparation time of this page was 0.3 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	3	3	1	2	3	2	3	3	3	3	1	3	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107896259 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107896259 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**