ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107896341	uncharacterized LOC107896341
ghi-r.1	107938918	uncharacterized LOC107938918
ghi-r.1	107940104	uncharacterized LOC107940104
ghi-r.1	107909385	uncharacterized LOC107909385
ath-u.5	AT4G36660	polyol transporter, putative (DUF1195)
ath-u.5	AT5G65650	sugar transporter, putative (DUF1195)
bra-r.6	103866654	uncharacterized LOC103866654
bra-r.6	103862481	uncharacterized LOC103862481
bra-r.6	103829572	uncharacterized LOC103829572
bna-r.1	106442304	uncharacterized LOC106442304
bna-r.1	106410761	uncharacterized LOC106410761
bna-r.1	106450798	uncharacterized LOC106450798
cit-r.1	102620496	uncharacterized LOC102620496
gma-u.5	100787922	uncharacterized LOC100787922
gma-u.5	100801282	uncharacterized LOC100801282
gma-u.5	100803339	uncharacterized LOC100803339
vvi-u.5	100264357	uncharacterized LOC100264357
ppo-u.5	18099297	uncharacterized LOC18099297
ppo-u.5	7455672	uncharacterized LOC7455672
ppo-u.5	7473160	uncharacterized LOC7473160
mtr-u.5	11407520	uncharacterized LOC11407520
mtr-u.5	25490184	uncharacterized LOC25490184
sly-u.5	101256584	uncharacterized LOC101256584
sly-u.5	101254457	uncharacterized LOC101254457
sly-u.5	101253740	uncharacterized LOC101253740
sot-r.1	102605860	uncharacterized LOC102605860
sot-r.1	102599104	uncharacterized LOC102599104
sot-r.1	102585551	uncharacterized LOC102585551
nta-r.1	107783937	uncharacterized LOC107783937
nta-r.1	107790343	uncharacterized LOC107790343
nta-r.1	107793070	uncharacterized LOC107793070
osa-u.5	4333097	uncharacterized LOC4333097
osa-u.5	4343862	uncharacterized LOC4343862
zma-u.5	100276045	uncharacterized LOC100276045
zma-u.5	100275113	uncharacterized LOC100275113
tae-r.2	123052132	uncharacterized LOC123052132
tae-r.2	123045821	uncharacterized LOC123045821
tae-r.2	123053710	uncharacterized LOC123053710
hvu-r.1	123427061	uncharacterized LOC123427061
sbi-r.1	8060667	uncharacterized LOC8060667
sbi-r.1	8077054	uncharacterized LOC8077054
bdi-r.1	100822234	uncharacterized LOC100822234
bdi-r.1	112268725	uncharacterized LOC112268725

Top 50 coexpressed genes to 107896341 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107896341 (ghi-r.1 coexpression data)

CoexMap"107896341"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_016676989.1 [sequence] [blastp]
XP_016676997.1 [sequence] [blastp]
XP_016677000.1 [sequence] [blastp]
XP_016677015.1 [sequence] [blastp]
XP_040937702.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 1, chlo 1, mito 1, extr 1, vacu 1, E.R. 1, cysk 1, chlo_mito 1, nucl_plas 1, E.R._vacu 1	(predict for XP_016676989.1)
cyto 4, mito 1, E.R._plas 1, plas 1, E.R. 1, chlo_mito 1, chlo 1, nucl 1, extr 1, vacu 1, cyto_mito 1	(predict for XP_016676997.1)
cyto 4, E.R. 1, cyto_pero 1, mito 1, E.R._plas 1	(predict for XP_016677000.1)
cyto 3, E.R. 2, cyto_plas 2, mito 1, plas 1, E.R._vacu 1, cyto_pero 1, mito_plas 1	(predict for XP_016677015.1)
cyto 2, mito 2, nucl 1, E.R._plas 1, plas 1, E.R. 1, chlo_mito 1, cyto_mito 1, cysk_nucl 1, cyto_pero 1	(predict for XP_040937702.1)

Subcellular
localization
TargetP

other 9	(predict for XP_016676989.1)
other 9	(predict for XP_016676997.1)
other 9	(predict for XP_016677000.1)
other 9	(predict for XP_016677015.1)
other 9	(predict for XP_040937702.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107896341	ghi-r.1 for 107938918	ghi-r.1 for 107940104	ghi-r.1 for 107909385	ath-u.5 for AT4G36660	ath-u.5 for AT5G65650	bra-r.6 for 103866654	bra-r.6 for 103862481	bra-r.6 for 103829572	bna-r.1 for 106442304	bna-r.1 for 106410761	bna-r.1 for 106450798	cit-r.1 for 102620496	gma-u.5 for 100787922	gma-u.5 for 100801282	gma-u.5 for 100803339	vvi-u.5 for 100264357	ppo-u.5 for 18099297	ppo-u.5 for 7455672	ppo-u.5 for 7473160	mtr-u.5 for 11407520	mtr-u.5 for 25490184	sly-u.5 for 101256584	sly-u.5 for 101254457	sly-u.5 for 101253740	sot-r.1 for 102605860	sot-r.1 for 102599104	sot-r.1 for 102585551	nta-r.1 for 107783937	nta-r.1 for 107790343	nta-r.1 for 107793070	osa-u.5 for 4333097	osa-u.5 for 4343862	zma-u.5 for 100276045	zma-u.5 for 100275113	tae-r.2 for 123052132	tae-r.2 for 123045821	tae-r.2 for 123053710	hvu-r.1 for 123427061	sbi-r.1 for 8060667	sbi-r.1 for 8077054	bdi-r.1 for 100822234	bdi-r.1 for 112268725

Ortholog

Ortholog ID: 2496

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC107896341

uncharacterized LOC107940104

uncharacterized LOC107909385

polyol transporter, putative (DUF1195)

sugar transporter, putative (DUF1195)

uncharacterized LOC103866654

uncharacterized LOC103862481

uncharacterized LOC103829572

uncharacterized LOC106442304

uncharacterized LOC106410761

uncharacterized BNAA03G53520D

uncharacterized LOC102620496

uncharacterized LOC100801282

uncharacterized LOC100803339

uncharacterized LOC100800366

uncharacterized LOC100264357

uncharacterized LOC18099297

uncharacterized LOC7455672

uncharacterized LOC7473160

uncharacterized LOC11407520

uncharacterized LOC25490184

uncharacterized LOC101256584

uncharacterized LOC101254457

uncharacterized LOC101253740

uncharacterized LOC102605860

uncharacterized LOC102599104

uncharacterized LOC102585551

uncharacterized LOC107783937

uncharacterized LOC107790343

uncharacterized LOC107828047

uncharacterized LOC4333097

uncharacterized LOC4343862

uncharacterized LOC100276045

uncharacterized LOC100275113

uncharacterized LOC123052132

uncharacterized LOC123187991

uncharacterized LOC123189584

uncharacterized LOC123427061

uncharacterized LOC8060667

uncharacterized LOC8077054

uncharacterized LOC100822234

uncharacterized LOC112268725

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	6
gma00020	Citrate cycle (TCA cycle)	4
gma01210	2-Oxocarboxylic acid metabolism	4
gma00010	Glycolysis / Gluconeogenesis	3
gma00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2
ppo03010	Ribosome	2
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00670	One carbon pool by folate	3
ppo01230	Biosynthesis of amino acids	2
ppo01240	Biosynthesis of cofactors	2
ppo00999	Biosynthesis of various plant secondary metabolites	2
ppo00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04814	Motor proteins	5
sly01200	Carbon metabolism	3
sly00010	Glycolysis / Gluconeogenesis	2
sly00620	Pyruvate metabolism	2
sly04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
nta01230	Biosynthesis of amino acids	5
nta04120	Ubiquitin mediated proteolysis	4
nta00350	Tyrosine metabolism	2
nta00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	7
zma04145	Phagosome	7
zma04142	Lysosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	4
zma00510	N-Glycan biosynthesis	3
zma00513	Various types of N-glycan biosynthesis	3
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00541	Biosynthesis of various nucleotide sugars	2
tae01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00480	Glutathione metabolism	2
hvu00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3

Expression

Expression pattern

Entrez Gene ID^*

107896341

107940104

107909385

829819

836691

103866654

103862481

103829572

106442304

106410761

106451972

102620496

100801282

100803339

100800366

100264357

18099297

7455672

7473160

11407520

25490184

101256584

101254457

101253740

102605860

102599104

102585551

107783937

107790343

107828047

4333097

4343862

100276045

100275113

123052132

123187991

123189584

123427061

8060667

8077054

100822234

112268725

The preparation time of this page was 1.7 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	1	3	1	3	2	3	3	3	2	2	3	1	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107896341 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107896341 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**