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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107897085   endoribonuclease YBEY, chloroplastic 
 ghi-r.1   107901508   endoribonuclease YBEY, chloroplastic 
 ath-u.5   AT2G25870   haloacid dehalogenase-like hydrolase family protein 
 bra-r.6   103864697   endoribonuclease YBEY, chloroplastic 
 bna-r.1   106401307   endoribonuclease YBEY, chloroplastic 
 bna-r.1   106446802   endoribonuclease YBEY, chloroplastic 
 cit-r.1   102620354   hypothetical protein 
 gma-u.5   100810101   endoribonuclease YBEY, chloroplastic 
 gma-u.5   100803046   endoribonuclease YBEY, chloroplastic-like 
 vvi-u.5   100268155   endoribonuclease YBEY, chloroplastic 
 ppo-u.5   7476638   endoribonuclease YBEY, chloroplastic 
 mtr-u.5   11432255   endoribonuclease YBEY, chloroplastic 
 sly-u.5   101246947   endoribonuclease YbeY-like 
 sot-r.1   102599696   uncharacterized LOC102599696 
 nta-r.1   107817156   endoribonuclease YBEY, chloroplastic 
 nta-r.1   107798500   endoribonuclease YBEY, chloroplastic 
 osa-u.5   4327201   endoribonuclease YBEY, chloroplastic 
 osa-u.5   4328787   endoribonuclease YBEY, chloroplastic 
 osa-u.5   4346956   endoribonuclease YBEY, chloroplastic 
 zma-u.5   103627072   haloacid dehalogenase-like hydrolase family protein 
 zma-u.5   100280165   uncharacterized LOC100280165 
 tae-r.2   123046966   endoribonuclease YBEY, chloroplastic 
 tae-r.2   123054796   endoribonuclease YBEY, chloroplastic 
 tae-r.2   123061964   endoribonuclease YBEY, chloroplastic 
 hvu-r.1   123428019   endoribonuclease YBEY, chloroplastic-like 
 hvu-r.1   123444363   endoribonuclease YBEY, chloroplastic-like 
 sbi-r.1   8085544   uncharacterized LOC8085544 
 sbi-r.1   8062162   uncharacterized LOC8062162 
 bdi-r.1   100846410   endoribonuclease YBEY, chloroplastic 
 bdi-r.1   100825618   endoribonuclease YBEY, chloroplastic 
 cre-r.1   CHLRE_06g252150v5   uncharacterized protein 
 cre-r.1   CHLRE_09g402960v5   uncharacterized protein 
 cre-r.1   CHLRE_09g402997v5   uncharacterized protein 

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Top 50 coexpressed genes to 107897085 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107897085 (ghi-r.1 coexpression data)

CoexMap"107897085"


ghiLOC107897085 | Entrez gene ID : 107897085    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 1 1 1 1 1 2 3 2 3 2 2 2 3
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006364 [list] [network] rRNA processing  (477 genes)  IEA  
GO CC
GO MF
GO:0004222 [list] [network] metalloendopeptidase activity  (137 genes)  IEA  
Protein XP_016677913.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_016677913.2)
Subcellular
localization
TargetP
chlo 2  (predict for XP_016677913.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107897085
ghi-r.1
for
107901508
ath-u.5
for
AT2G25870
bra-r.6
for
103864697
bna-r.1
for
106401307
bna-r.1
for
106446802
cit-r.1
for
102620354
gma-u.5
for
100810101
gma-u.5
for
100803046
vvi-u.5
for
100268155
ppo-u.5
for
7476638
mtr-u.5
for
11432255
sly-u.5
for
101246947
sot-r.1
for
102599696
nta-r.1
for
107817156
nta-r.1
for
107798500
osa-u.5
for
4327201
osa-u.5
for
4328787
osa-u.5
for
4346956
zma-u.5
for
103627072
zma-u.5
for
100280165
tae-r.2
for
123046966
tae-r.2
for
123054796
tae-r.2
for
123061964
hvu-r.1
for
123428019
hvu-r.1
for
123444363
sbi-r.1
for
8085544
sbi-r.1
for
8062162
bdi-r.1
for
100846410
bdi-r.1
for
100825618
cre-r.1
for
CHLRE_06g252150v5
cre-r.1
for
CHLRE_09g402960v5
cre-r.1
for
CHLRE_09g402997v5


Ortholog ID: 5262
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre cre cre
Symbol LOC107897085 LOC107901508 AT2G25870 LOC103864697 LOC106401307 LOC106446802 LOC102620354 LOC100810101 LOC100803046 LOC100268155 LOC7476638 LOC11432255 LOC101246947 LOC102599696 LOC107817156 LOC107798500 LOC4327201 LOC4328787 LOC4346956 LOC103627072 LOC100280165 LOC123046966 LOC123079075 LOC123190638 LOC123428019 LOC123444363 LOC8085544 LOC8062162 LOC100846410 LOC100825618 CHLRE_06g252150v5 CHLRE_09g402960v5 CHLRE_09g402997v5
Function* endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic haloacid dehalogenase-like hydrolase family protein endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic hypothetical protein endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic-like endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic endoribonuclease YbeY-like uncharacterized LOC102599696 endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic haloacid dehalogenase-like hydrolase family protein uncharacterized LOC100280165 endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic-like endoribonuclease YBEY, chloroplastic-like uncharacterized LOC8085544 uncharacterized LOC8062162 endoribonuclease YBEY, chloroplastic endoribonuclease YBEY, chloroplastic uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 4
ghi00920 Sulfur metabolism 4
ghi04070 Phosphatidylinositol signaling system 4
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 5
ghi00920 Sulfur metabolism 5
ghi04070 Phosphatidylinositol signaling system 5
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 7
ath01230 Biosynthesis of amino acids 3
ath00260 Glycine, serine and threonine metabolism 2
ath01210 2-Oxocarboxylic acid metabolism 2
ath00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 3
bra01240 Biosynthesis of cofactors 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 4
bna00730 Thiamine metabolism 4
bna01232 Nucleotide metabolism 4
bna01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 4
bna00730 Thiamine metabolism 4
bna01232 Nucleotide metabolism 4
bna01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma00670 One carbon pool by folate 2
gma01200 Carbon metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 2
gma00410 beta-Alanine metabolism 2
gma00640 Propanoate metabolism 2
gma01200 Carbon metabolism 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00630 Glyoxylate and dicarboxylate metabolism 5
sly01200 Carbon metabolism 5
sly00260 Glycine, serine and threonine metabolism 2
sly00670 One carbon pool by folate 2
sly00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 2
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 6
nta00620 Pyruvate metabolism 6
nta01200 Carbon metabolism 6
nta01212 Fatty acid metabolism 6
nta00640 Propanoate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 8
nta01212 Fatty acid metabolism 8
nta00620 Pyruvate metabolism 6
nta01200 Carbon metabolism 6
nta00640 Propanoate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 4
osa01230 Biosynthesis of amino acids 4
osa00230 Purine metabolism 3
osa01240 Biosynthesis of cofactors 3
osa00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
osa00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 7
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu01230 Biosynthesis of amino acids 2
hvu03013 Nucleocytoplasmic transport 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03430 Mismatch repair 4
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 6
sbi00300 Lysine biosynthesis 4
sbi01240 Biosynthesis of cofactors 4
sbi00470 D-Amino acid metabolism 3
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi00920 Sulfur metabolism 2
bdi01230 Biosynthesis of amino acids 2
bdi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107897085 107901508 817128 103864697 106401307 106446802 102620354 100810101 100803046 100268155 7476638 11432255 101246947 102599696 107817156 107798500 4327201 4328787 4346956 103627072 100280165 123046966 123079075 123190638 123428019 123444363 8085544 8062162 100846410 100825618 5722178 66054819 5723192
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