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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107897769   60S ribosomal protein L35 
 ghi-r.1   107918620   60S ribosomal protein L35 
 ghi-r.1   107904104   60S ribosomal protein L35 
 ghi-r.1   107957340   60S ribosomal protein L35 
 ath-u.5   AT2G39390   Ribosomal L29 family protein 
 ath-u.5   AT3G09500   Ribosomal L29 family protein 
 ath-u.5   AT3G55170   Ribosomal L29 family protein 
 bra-r.6   103847436   60S ribosomal protein L35-4 
 bra-r.6   103870540   60S ribosomal protein L35-1 
 bna-r.1   106439191   60S ribosomal protein L35-1 
 bna-r.1   106443587   60S ribosomal protein L35-2 
 bna-r.1   106450278   60S ribosomal protein L35-2-like 
 cit-r.1   102618448   60S ribosomal protein L35 
 cit-r.1   102618082   60S ribosomal protein L35-like 
 gma-u.5   100789845   60S ribosomal protein L35 
 gma-u.5   100305671   uncharacterized LOC100305671 
 gma-u.5   100306624   uncharacterized LOC100306624 
 vvi-u.5   100265729   large ribosomal subunit protein uL29 
 vvi-u.5   100246718   large ribosomal subunit protein uL29 
 ppo-u.5   7469794   60S ribosomal protein L35 
 ppo-u.5   7458614   60S ribosomal protein L35 
 ppo-u.5   7491950   60S ribosomal protein L35 
 mtr-u.5   11412433   60S ribosomal protein L35 
 mtr-u.5   11446573   60S ribosomal protein L35 
 mtr-u.5   25484086   60S ribosomal protein L35 
 sly-u.5   101267698   large ribosomal subunit protein uL29-like 
 sly-u.5   101256286   large ribosomal subunit protein uL29 
 sly-u.5   778319   60S ribosomal protein L35-like 
 sot-r.1   107058344   60S ribosomal protein L35-like 
 sot-r.1   102594168   60S ribosomal protein L35-like 
 sot-r.1   102586719   60S ribosomal protein L35 
 nta-r.1   107763659   large ribosomal subunit protein uL29 
 nta-r.1   107759229   large ribosomal subunit protein uL29 
 nta-r.1   107775827   large ribosomal subunit protein uL29-like 
 osa-u.5   4335607   large ribosomal subunit protein uL29 
 osa-u.5   4329423   large ribosomal subunit protein uL29 
 zma-u.5   100281802   60S ribosomal protein L35 
 zma-u.5   100282133   60S ribosomal protein L35 
 zma-u.5   100282013   60S ribosomal protein L35 
 tae-r.2   123045266   60S ribosomal protein L35-2 
 tae-r.2   123053102   60S ribosomal protein L35-2 
 tae-r.2   123189008   60S ribosomal protein L35-2 
 hvu-r.1   123426489   60S ribosomal protein L35-4 
 sbi-r.1   8059570   60S ribosomal protein L35-4 
 sbi-r.1   8056070   60S ribosomal protein L35-4 
 bdi-r.1   100820930   60S ribosomal protein L35-2 
 bdi-r.1   100824864   60S ribosomal protein L35-4 
 cre-r.1   CHLRE_14g617900v5   ribosomal protein L35 

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Top 50 coexpressed genes to 107897769 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107897769 (ghi-r.1 coexpression data)

CoexMap"107897769"


ghiLOC107897769 | Entrez gene ID : 107897769    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 3 2 3 2 3 3 3 3 3 2 3 3 1 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03010 [list] [network] Ribosome (2429 genes)
GO BP
GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (47 genes)  IEA  
GO:0006412 [list] [network] translation  (1487 genes)  IEA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (467 genes)  IEA  
GO:0005840 [list] [network] ribosome  (1110 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (1075 genes)  IEA  
Protein XP_016678827.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 3,  mito 3,  cyto_nucl 3  (predict for XP_016678827.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016678827.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107897769
ghi-r.1
for
107918620
ghi-r.1
for
107904104
ghi-r.1
for
107957340
ath-u.5
for
AT2G39390
ath-u.5
for
AT3G09500
ath-u.5
for
AT3G55170
bra-r.6
for
103847436
bra-r.6
for
103870540
bna-r.1
for
106439191
bna-r.1
for
106443587
bna-r.1
for
106450278
cit-r.1
for
102618448
cit-r.1
for
102618082
gma-u.5
for
100789845
gma-u.5
for
100305671
gma-u.5
for
100306624
vvi-u.5
for
100265729
vvi-u.5
for
100246718
ppo-u.5
for
7469794
ppo-u.5
for
7458614
ppo-u.5
for
7491950
mtr-u.5
for
11412433
mtr-u.5
for
11446573
mtr-u.5
for
25484086
sly-u.5
for
101267698
sly-u.5
for
101256286
sly-u.5
for
778319
sot-r.1
for
107058344
sot-r.1
for
102594168
sot-r.1
for
102586719
nta-r.1
for
107763659
nta-r.1
for
107759229
nta-r.1
for
107775827
osa-u.5
for
4335607
osa-u.5
for
4329423
zma-u.5
for
100281802
zma-u.5
for
100282133
zma-u.5
for
100282013
tae-r.2
for
123045266
tae-r.2
for
123053102
tae-r.2
for
123189008
hvu-r.1
for
123426489
sbi-r.1
for
8059570
sbi-r.1
for
8056070
bdi-r.1
for
100820930
bdi-r.1
for
100824864
cre-r.1
for
CHLRE_14g617900v5


Ortholog ID: 1340
Species ghi ghi ghi ath ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol LOC107918620 LOC107957340 LOC107932419 AT2G39390 AT3G55170 AT5G02610 LOC103847436 LOC103870540 LOC103859293 LOC106439191 LOC106452747 LOC106389527 LOC102618448 LOC102618082 LOC100305671 LOC100798230 LOC100801539 LOC100265729 LOC100246718 LOC7469794 LOC7458614 LOC7491950 LOC11446573 LOC25484086 LOC11408161 LOC101267698 LOC101256286 LOC778319 LOC102586719 LOC102579307 LOC102577759 LOC107775827 LOC107822355 LOC142166078 LOC4335607 LOC4329423 LOC100281802 LOC100282133 LOC100282013 LOC123045266 LOC123053102 LOC123189008 LOC123426489 LOC8059570 LOC8056070 LOC100820930 LOC100824864 CHLRE_14g617900v5
Function* 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 Ribosomal L29 family protein Ribosomal L29 family protein Ribosomal L29 family protein 60S ribosomal protein L35-4 60S ribosomal protein L35-1 60S ribosomal protein L35-1 60S ribosomal protein L35-1 60S ribosomal protein L35-1 60S ribosomal protein L35-4 60S ribosomal protein L35 60S ribosomal protein L35-like uncharacterized LOC100305671 60S ribosomal protein L35 60S ribosomal protein L35 large ribosomal subunit protein uL29 large ribosomal subunit protein uL29 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 large ribosomal subunit protein uL29-like large ribosomal subunit protein uL29 60S ribosomal protein L35-like 60S ribosomal protein L35 60S ribosomal protein L35-like uncharacterized LOC102577759 large ribosomal subunit protein uL29-like large ribosomal subunit protein uL29 large ribosomal subunit protein uL29 large ribosomal subunit protein uL29 large ribosomal subunit protein uL29 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35 60S ribosomal protein L35-2 60S ribosomal protein L35-2 60S ribosomal protein L35-2 60S ribosomal protein L35-4 60S ribosomal protein L35-4 60S ribosomal protein L35-4 60S ribosomal protein L35-2 60S ribosomal protein L35-4 ribosomal protein L35
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 19
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 16
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 18
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 14
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
sot00220 Arginine biosynthesis 2
sot00240 Pyrimidine metabolism 2
sot00250 Alanine, aspartate and glutamate metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
nta04120 Ubiquitin mediated proteolysis 4
nta03018 RNA degradation 3
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 19
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 18
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107918620 107957340 107932419 818524 824683 831853 103847436 103870540 103859293 106439191 106452747 106389527 102618448 102618082 100305671 100798230 100801539 100265729 100246718 7469794 7458614 7491950 11446573 25484086 11408161 101267698 101256286 778319 102586719 102579307 102577759 107775827 107822355 142166078 4335607 4329423 100281802 100282133 100282013 123045266 123053102 123189008 123426489 8059570 8056070 100820930 100824864 5715848
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