ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107899738	uncharacterized LOC107899738
ghi-r.1	107906142	uncharacterized LOC107906142
ghi-r.1	121229356	uncharacterized LOC121229356
ath-u.5	AT3G11560	LETM1-like protein
ath-u.5	AT5G06220	LETM1-like protein
bra-r.6	103855661	uncharacterized LOC103855661
bra-r.6	103847564	uncharacterized LOC103847564
bra-r.6	103870332	uncharacterized LOC103870332
bna-r.1	106388608	uncharacterized LOC106388608
bna-r.1	125587900	uncharacterized LOC125587900
bna-r.1	111215737	uncharacterized LOC111215737
cit-r.1	102624356	uncharacterized LOC102624356
cit-r.1	102607747	uncharacterized LOC102607747
gma-u.5	100793363	uncharacterized LOC100793363
gma-u.5	100787840	uncharacterized LOC100787840
vvi-u.5	104880365	uncharacterized LOC104880365
vvi-u.5	100855084	uncharacterized LOC100855084
vvi-u.5	100257992	uncharacterized LOC100257992
ppo-u.5	18094774	uncharacterized LOC18094774
ppo-u.5	7465250	uncharacterized LOC7465250
ppo-u.5	7466020	uncharacterized LOC7466020
mtr-u.5	25499418	uncharacterized LOC25499418
mtr-u.5	25483773	uncharacterized LOC25483773
sly-u.5	101251594	uncharacterized LOC101251594
sly-u.5	101244408	uncharacterized LOC101244408
sot-r.1	102603311	uncharacterized LOC102603311
sot-r.1	102591066	uncharacterized LOC102591066
nta-r.1	107801868	uncharacterized LOC107801868
nta-r.1	107789494	uncharacterized LOC107789494
nta-r.1	107772817	uncharacterized LOC107772817
osa-u.5	4345857	uncharacterized LOC4345857
zma-u.5	103641321	LETM1-like protein
tae-r.2	123162121	uncharacterized LOC123162121
tae-r.2	123146866	uncharacterized LOC123146866
tae-r.2	123169267	uncharacterized LOC123169267
hvu-r.1	123412966	uncharacterized LOC123412966
sbi-r.1	8067047	uncharacterized LOC8067047
bdi-r.1	100844293	uncharacterized LOC100844293
cre-r.1	CHLRE_12g538700v5	uncharacterized protein

Top 50 coexpressed genes to 107899738 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107899738 (ghi-r.1 coexpression data)

CoexMap"107899738"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0030003 [list] [network] intracellular monoatomic cation homeostasis

(242 genes)

IEA

GO CC

GO:0005743 [list] [network] mitochondrial inner membrane

(280 genes)

IEA

GO MF

Protein

XP_016681011.1 [sequence] [blastp]
XP_016681012.1 [sequence] [blastp]
XP_016681013.1 [sequence] [blastp]
XP_040947251.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10	(predict for XP_016681011.1)
chlo 7, mito 2	(predict for XP_016681012.1)
chlo 10	(predict for XP_016681013.1)
chlo 7, mito 1, nucl 1, plas 1, cyto_mito 1, nucl_plas 1	(predict for XP_040947251.1)

Subcellular
localization
TargetP

chlo 8	(predict for XP_016681011.1)
chlo 7	(predict for XP_016681012.1)
chlo 8	(predict for XP_016681013.1)
chlo 7	(predict for XP_040947251.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107899738	ghi-r.1 for 107906142	ghi-r.1 for 121229356	ath-u.5 for AT3G11560	ath-u.5 for AT5G06220	bra-r.6 for 103855661	bra-r.6 for 103847564	bra-r.6 for 103870332	bna-r.1 for 106388608	bna-r.1 for 125587900	bna-r.1 for 111215737	cit-r.1 for 102624356	cit-r.1 for 102607747	gma-u.5 for 100793363	gma-u.5 for 100787840	vvi-u.5 for 104880365	vvi-u.5 for 100855084	vvi-u.5 for 100257992	ppo-u.5 for 18094774	ppo-u.5 for 7465250	ppo-u.5 for 7466020	mtr-u.5 for 25499418	mtr-u.5 for 25483773	sly-u.5 for 101251594	sly-u.5 for 101244408	sot-r.1 for 102603311	sot-r.1 for 102591066	nta-r.1 for 107801868	nta-r.1 for 107789494	nta-r.1 for 107772817	osa-u.5 for 4345857	zma-u.5 for 103641321	tae-r.2 for 123162121	tae-r.2 for 123146866	tae-r.2 for 123169267	hvu-r.1 for 123412966	sbi-r.1 for 8067047	bdi-r.1 for 100844293	cre-r.1 for CHLRE_12g538700v5

Ortholog

Ortholog ID: 3798

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC107899738

uncharacterized LOC107906142

uncharacterized LOC121229356

LETM1-like protein

uncharacterized LOC103855661

uncharacterized LOC103847564

uncharacterized LOC103870332

uncharacterized LOC111215737

uncharacterized LOC106427686

uncharacterized LOC106426388

uncharacterized LOC102624356

uncharacterized LOC102607747

uncharacterized LOC100793363

uncharacterized LOC100787840

uncharacterized LOC102668384

uncharacterized LOC100855084

uncharacterized LOC100257992

uncharacterized LOC18094774

uncharacterized LOC7465250

uncharacterized LOC7466020

uncharacterized LOC25499418

uncharacterized LOC25483773

uncharacterized LOC101251594

uncharacterized LOC101244408

uncharacterized LOC102603311

uncharacterized LOC102591066

uncharacterized LOC107801868

uncharacterized LOC107789494

uncharacterized LOC107772817

uncharacterized LOC4345857

LETM1-like protein

uncharacterized LOC123162121

uncharacterized LOC123146866

uncharacterized LOC123169267

uncharacterized LOC123412966

uncharacterized LOC8067047

uncharacterized LOC100844293

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	2
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00520	Amino sugar and nucleotide sugar metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00520	Amino sugar and nucleotide sugar metabolism	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00280	Valine, leucine and isoleucine degradation	4
ath00640	Propanoate metabolism	2
ath00785	Lipoic acid metabolism	2
ath01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00620	Pyruvate metabolism	2
bna00710	Carbon fixation by Calvin cycle	2
bna01200	Carbon metabolism	2
bna03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00906	Carotenoid biosynthesis	2
gma00760	Nicotinate and nicotinamide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00620	Pyruvate metabolism	3
gma01200	Carbon metabolism	3
gma00061	Fatty acid biosynthesis	2
gma00640	Propanoate metabolism	2
gma01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00909	Sesquiterpenoid and triterpenoid biosynthesis	2
vvi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	3
ppo03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00350	Tyrosine metabolism	2
nta00360	Phenylalanine metabolism	2
nta00380	Tryptophan metabolism	2
nta00901	Indole alkaloid biosynthesis	2
nta00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00562	Inositol phosphate metabolism	3
zma04070	Phosphatidylinositol signaling system	3
zma04145	Phagosome	2
zma00760	Nicotinate and nicotinamide metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

107899738

107906142

121229356

820329

830509

103855661

103847564

103870332

111215737

106427686

106426388

102624356

102607747

100793363

100787840

102668384

100855084

100257992

18094774

7465250

7466020

25499418

25483773

101251594

101244408

102603311

102591066

107801868

107789494

107772817

4345857

103641321

123162121

123146866

123169267

123412966

8067047

100844293

5718441

The preparation time of this page was 1.2 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	3	3	2	2	3	3	2	2	2	3	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107899738 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107899738 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**