ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107901737	uncharacterized LOC107901737
ghi-r.1	107950143	uncharacterized LOC107950143
ghi-r.1	107906567	uncharacterized LOC107906567
ghi-r.1	107885983	uncharacterized LOC107885983
ath-u.5	AT5G59460	scarecrow-like transcription factor 11 (SCL11)
bra-r.6	103851578	uncharacterized LOC103851578
bra-r.6	103845371	uncharacterized LOC103845371
bna-r.1	106420492	uncharacterized LOC106420492
bna-r.1	106360100	uncharacterized LOC106360100
cit-r.1	102624538	uncharacterized LOC102624538
gma-u.5	100500671	uncharacterized LOC100500671
gma-u.5	100500463	uncharacterized LOC100500463
vvi-u.5	100267367	uncharacterized LOC100267367
ppo-u.5	7481528	uncharacterized LOC7481528
mtr-u.5	11417386	uncharacterized LOC11417386
sly-u.5	101255403	uncharacterized LOC101255403
sot-r.1	102585757	uncharacterized LOC102585757
nta-r.1	107832237	uncharacterized LOC107832237
nta-r.1	107793513	uncharacterized LOC107793513
nta-r.1	107761226	uncharacterized LOC107761226
osa-u.5	4325469	uncharacterized LOC4325469
zma-u.5	100277744	uncharacterized LOC100277744
tae-r.2	123060087	uncharacterized LOC123060087
tae-r.2	123068564	uncharacterized LOC123068564
tae-r.2	123077104	uncharacterized LOC123077104
hvu-r.1	123442659	uncharacterized LOC123442659
sbi-r.1	8060810	uncharacterized LOC8060810
bdi-r.1	100838897	uncharacterized LOC100838897

Annotation

functional annotation

KEGG

ghi03018 [list] [network] RNA degradation (286 genes)

GO BP

GO:0000460 [list] [network] maturation of 5.8S rRNA

(78 genes)

IEA

GO CC

GO MF

Protein

XP_016750598.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, cyto_nucl 4, nucl 1

(predict for XP_016750598.1)

Subcellular
localization
TargetP

mito 6, other 3

(predict for XP_016750598.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107901737	ghi-r.1 for 107950143	ghi-r.1 for 107906567	ghi-r.1 for 107885983	ath-u.5 for AT5G59460	bra-r.6 for 103851578	bra-r.6 for 103845371	bna-r.1 for 106420492	bna-r.1 for 106360100	cit-r.1 for 102624538	gma-u.5 for 100500671	gma-u.5 for 100500463	vvi-u.5 for 100267367	ppo-u.5 for 7481528	mtr-u.5 for 11417386	sly-u.5 for 101255403	sot-r.1 for 102585757	nta-r.1 for 107832237	nta-r.1 for 107793513	nta-r.1 for 107761226	osa-u.5 for 4325469	zma-u.5 for 100277744	tae-r.2 for 123060087	tae-r.2 for 123068564	tae-r.2 for 123077104	hvu-r.1 for 123442659	sbi-r.1 for 8060810	bdi-r.1 for 100838897

Ortholog

Ortholog ID: 7386

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC107901737

uncharacterized LOC107950143

uncharacterized LOC107906567

scarecrow-like transcription factor 11 (SCL11)

uncharacterized LOC103851578

uncharacterized LOC103845371

uncharacterized LOC106420492

uncharacterized LOC106360100

uncharacterized LOC102624538

uncharacterized LOC100500671

uncharacterized LOC100500463

uncharacterized LOC100267367

uncharacterized LOC7481528

uncharacterized LOC11417386

uncharacterized LOC101255403

uncharacterized LOC102585757

uncharacterized LOC107832237

uncharacterized LOC107793513

uncharacterized LOC107761226

uncharacterized LOC4325469

uncharacterized LOC100277744

uncharacterized LOC123060087

uncharacterized LOC123068564

uncharacterized LOC123077104

uncharacterized LOC123442659

uncharacterized LOC8060810

uncharacterized LOC100838897

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03420	Nucleotide excision repair	4
bra03020	RNA polymerase	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	7
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03060	Protein export	4
bna03018	RNA degradation	3
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	3
bna04130	SNARE interactions in vesicular transport	2
bna03018	RNA degradation	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	2
gma03018	RNA degradation	2
gma00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03020	RNA polymerase	2
mtr03420	Nucleotide excision repair	2
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	3
sly03040	Spliceosome	2
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	12
nta03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4
nta03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4
nta03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	2
osa03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4
tae03008	Ribosome biogenesis in eukaryotes	3
tae03018	RNA degradation	3
tae00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03420	Nucleotide excision repair	4
hvu03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi00190	Oxidative phosphorylation	2
sbi00061	Fatty acid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

107901737

107950143

107906567

836065

103851578

103845371

106420492

106360100

102624538

100500671

100500463

100267367

7481528

11417386

101255403

102585757

107832237

107793513

107761226

4325469

100277744

123060087

123068564

123077104

123442659

8060810

100838897

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107901737 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107901737 (ghi-r.1 coexpression data)


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	2	2	1	2	1	1	1	1	1	3	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107901737 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107901737 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**